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Aliases for ENSG00000235939 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000235939 Gene

  • Novel Transcript 5
  • AL138760.1 5

External Ids for ENSG00000235939 Gene

Previous GeneCards Identifiers for ENSG00000235939 Gene

  • GC10P050627

Summaries for ENSG00000235939 Gene

GeneCards Summary for ENSG00000235939 Gene

ENSG00000235939 is an RNA Gene.

Additional gene information for ENSG00000235939 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000235939 Gene

Genomics for ENSG00000235939 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000235939 Gene

Promoters and enhancers for ENSG00000235939 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J049418 Enhancer 1 Ensembl ENCODE 600.7 -0.3 -302 1.3 MTA3 SP1 NCOA3 MYC CREB1 GATAD2B TARDBP CTBP1 HES1 BMI1 ENSG00000235939 C10orf71-AS1 GC10P049396
GH10J049534 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 6.6 +118.1 118088 6.1 SP1 ELF3 ZFX MNT CBFA2T2 NKRF POLR2A GTF2F1 ZNF687 AHR ERCC6 LINC00843 WASHC2A AGAP6 RNA5SP317 PGBD3 ENSG00000235939 PIR54050
GH10J049508 Enhancer 0.7 Ensembl ENCODE 11.1 +86.8 86824 7 CBFB RUNX3 NFIC RCOR1 PRDM6 ZNF24 DRGX ENSG00000235939 ERCC6 GC10M049518 PGBD3 GC10M049433
GH10J049510 Enhancer 0.6 Ensembl 11.1 +92.1 92067 2.7 CC2D1A CTCF RAD21 ARID2 REST TRIM22 ZNF24 ZNF217 DPF2 CUX1 ERCC6 PGBD3 DRGX ENSG00000235939 ENSG00000226576 ARHGAP22 TMEM273 GC10M049518 GC10M049433
GH10J049519 Enhancer 0.6 ENCODE 11 +99.9 99923 0.1 CTCF RAD21 IKZF1 REST TRIM22 SCRT2 RUNX3 SMC3 ZNF654 VEZF1 ENSG00000235939 TMEM273 ARHGAP22 ENSG00000226576 GC10M049518 PGBD3 ERCC6 GC10M049433
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000235939 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000235939 Gene

Genomic Locations for ENSG00000235939 Gene
chr10:49,419,277-49,472,903
(GRCh38/hg38)
Size:
53,627 bases
Orientation:
Plus strand
chr10:50,627,323-50,680,949
(GRCh37/hg19)
Size:
53,627 bases
Orientation:
Plus strand

Genomic View for ENSG00000235939 Gene

Genes around ENSG00000235939 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000235939 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000235939 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000235939 Gene

Proteins for ENSG00000235939 Gene

Post-translational modifications for ENSG00000235939 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000235939 Gene

Domains & Families for ENSG00000235939 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000235939 Gene

Function for ENSG00000235939 Gene

Phenotypes From GWAS Catalog for ENSG00000235939 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000235939 Gene

Localization for ENSG00000235939 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000235939 Gene

Pathways & Interactions for ENSG00000235939 Gene

PathCards logo

SuperPathways for ENSG00000235939 Gene

No Data Available

Interacting Proteins for ENSG00000235939 Gene

Gene Ontology (GO) - Biological Process for ENSG00000235939 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000235939 Gene

Drugs & Compounds for ENSG00000235939 Gene

No Compound Related Data Available

Transcripts for ENSG00000235939 Gene

mRNA/cDNA for ENSG00000235939 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000235939 Gene

No ASD Table

Relevant External Links for ENSG00000235939 Gene

GeneLoc Exon Structure for
ENSG00000235939

Expression for ENSG00000235939 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000235939 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000235939 Gene

This gene is overexpressed in Minor Salivary Gland (x6.0), Esophagus - Mucosa (x4.7), and Prostate (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000235939: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000235939 Gene

Orthologs for ENSG00000235939 Gene

Evolution for ENSG00000235939 Gene

ENSEMBL:
Gene Tree for ENSG00000235939 (if available)
TreeFam:
Gene Tree for ENSG00000235939 (if available)

No data available for Orthologs for ENSG00000235939 Gene

Paralogs for ENSG00000235939 Gene

No data available for Paralogs for ENSG00000235939 Gene

Variants for ENSG00000235939 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000235939 Gene

Disorders for ENSG00000235939 Gene

No disorders were found for ENSG00000235939 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000235939 Gene

Publications for ENSG00000235939 Gene

No publications were found for ENSG00000235939 Gene.

No data available for External Links for ENSG00000235939 Gene

Products for ENSG00000235939 Gene

Sources for ENSG00000235939 Gene

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