Aliases for ENSG00000235939 Gene

Subcategory (RNA class) for ENSG00000235939 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000235939 Gene

  • Novel Transcript 5
  • NONHSAG005866.2 91
  • Lnc-C10orf71-1 165
  • HSALNG0077878 164
  • AL138760.1 5

External Ids for ENSG00000235939 Gene

Previous GeneCards Identifiers for ENSG00000235939 Gene

  • GC10P050627

Summaries for ENSG00000235939 Gene

GeneCards Summary for ENSG00000235939 Gene

ENSG00000235939 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000235939 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000235939 Gene

Genomics for ENSG00000235939 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000235939 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J049418 Enhancer 0.9 Ensembl ENCODE 600.7 -0.5 -476 1.6 CREB1 CTCF TEAD4 TARDBP ZHX2 FOXA1 ATF7 SCRT2 HES1 BMI1 ENSG00000235939 C10orf71-AS1 DRGX PGBD3
GH10J049537 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 6.6 +119.9 119911 2.8 HNRNPL ZNF629 PRDM10 TFE3 LEF1 POLR2A FOXA1 LARP7 GABPA PRDM1 ERCC6 lnc-CHAT-3 piR-44310 TIMM23B-AGAP6 WASHC2A AGAP6 RNA5SP317 ENSG00000235939 lnc-DRGX-4 PGBD3
GH10J049508 Enhancer 0.6 Ensembl ENCODE 11.1 +89.2 89224 2.2 RUNX3 CBFB NFIC TCF7 ZNF24 DRGX ENSG00000235939 ERCC6 lnc-DRGX-2 piR-30048-003 PGBD3
GH10J049519 Enhancer 0.6 ENCODE 11 +99.9 99923 0.1 CTCF IKZF1 FOXA1 REST RAD21 TRIM22 SCRT2 RUNX3 SMC3 ZNF654 ENSG00000235939 TMEM273 ARHGAP22 ENSG00000226576 lnc-DRGX-3 PGBD3 piR-30048-003 ERCC6 DRGX
GH10J049549 Enhancer 0.9 Ensembl ENCODE 6.9 +132.6 132624 5 JUND DDX20 ZNF740 HDAC1 SOX6 NR3C1 ZNF316 JUN NR2C2 MEF2D HMGB1P50 lnc-CHAT-1 PGBD3 ERCC6 ENSG00000235939 piR-50437-050 CHAT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000235939 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000235939 Gene

Genomic Locations for ENSG00000235939 Gene
chr10:49,419,277-49,472,904
(GRCh38/hg38)
Size:
53,628 bases
Orientation:
Plus strand
chr10:50,627,323-50,680,949
(GRCh37/hg19)
Size:
53,627 bases
Orientation:
Plus strand

Genomic View for ENSG00000235939 Gene

Genes around ENSG00000235939 on UCSC Golden Path with GeneCards custom track
ENSG00000235939 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000235939 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000235939 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000235939 Gene

Proteins for ENSG00000235939 Gene

Post-translational modifications for ENSG00000235939 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000235939 Gene

Domains & Families for ENSG00000235939 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000235939 Gene

Function for ENSG00000235939 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000235939 Gene

Localization for ENSG00000235939 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000235939 Gene

Pathways & Interactions for ENSG00000235939 Gene

PathCards logo

SuperPathways for ENSG00000235939 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000235939 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000235939 Gene

Drugs & Compounds for ENSG00000235939 Gene

No Compound Related Data Available

Transcripts for ENSG00000235939 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000235939 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000DAB2B_9606 lncRNA 435 3

Ensembl: ENST00000423283 (view in UCSC) ,

LNCipedia: lnc-C10orf71-1:1,

NONCODE: NONHSAT013304.2,

URS00009C3052_9606 lncRNA 705 2

LncBook: HSALNT0162538,

NONCODE: NONHSAT155488.1,

ENSG00000235939 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000235939 Gene

No ASD Table

Relevant External Links for ENSG00000235939 Gene

GeneLoc Exon Structure for
ENSG00000235939

No data available for mRNA/cDNA for ENSG00000235939 Gene

Expression for ENSG00000235939 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000235939 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000235939 Gene

This gene is overexpressed in Minor Salivary Gland (x6.0), Esophagus - Mucosa (x4.7), and Prostate (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000235939: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000235939 Gene

Orthologs for ENSG00000235939 Gene

Evolution for ENSG00000235939 Gene

ENSEMBL:
Gene Tree for ENSG00000235939 (if available)
TreeFam:
Gene Tree for ENSG00000235939 (if available)

No data available for Orthologs for ENSG00000235939 Gene

Paralogs for ENSG00000235939 Gene

No data available for Paralogs for ENSG00000235939 Gene

Variants for ENSG00000235939 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000235939 Gene

Disorders for ENSG00000235939 Gene

No disorders were found for ENSG00000235939 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000235939 Gene

Publications for ENSG00000235939 Gene

No publications were found for ENSG00000235939 Gene.

No data available for Mastermind for ENSG00000235939 Gene

Products for ENSG00000235939 Gene

Sources for ENSG00000235939 Gene