Aliases for ENSG00000235939 Gene

Subcategory (RNA class) for ENSG00000235939 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000235939 Gene

  • Novel Transcript 5
  • Lnc-C10orf71-1 170
  • HSALNG0077878 169
  • NONHSAG005866 94
  • AL138760.1 5

External Ids for ENSG00000235939 Gene

Previous GeneCards Identifiers for ENSG00000235939 Gene

  • GC10P050627

Summaries for ENSG00000235939 Gene

GeneCards Summary for ENSG00000235939 Gene

ENSG00000235939 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000235939 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000235939 Gene

Genomics for ENSG00000235939 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000235939 Gene

Promoters and enhancers for ENSG00000235939 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J049418 Enhancer 0.9 Ensembl ENCODE 750.6 -0.5 -476 1.6 SREBF1 TCF7L2 ZNF217 MNT MTA3 SP1 NCOA3 MYC CREB1 GATAD2B ENSG00000235939 C10orf71-AS1 DRGX
GH10J049537 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 6.6 +119.9 119911 2.8 SIN3A ZBTB40 FOXA1 ZBTB6 RBPJ POLR2A USF2 MYC ETV6 ELF1 ERCC6 PGBD3 lnc-CHAT-3 piR-44310 TIMM23B-AGAP6 RNA5SP317 AGAP6 PARG WASHC2A ENSG00000235939
GH10J049508 Enhancer 0.6 Ensembl ENCODE 11.1 +89.2 89224 2.2 ZNF24 CBFB RUNX3 NFIC DRGX ENSG00000235939 ERCC6 lnc-DRGX-2 piR-30048-003 PGBD3
GH10J049519 Enhancer 0.5 ENCODE 11 +99.9 99923 0.1 CTCF RAD21 IKZF1 REST TRIM22 SCRT2 RUNX3 SMC3 VEZF1 ENSG00000235939 TMEM273 ARHGAP22 ENSG00000226576 lnc-DRGX-3 piR-30048-003 ERCC6 PGBD3
GH10J049549 Enhancer 0.8 Ensembl ENCODE 6.9 +132.6 132624 5 CAVIN1 ZNF740 HDAC1 JUN ZNF316 JUND SOX6 EP300 STAT1 NR2C2 HMGB1P50 lnc-CHAT-1 ERCC6 PGBD3 ENSG00000235939 piR-50437-050
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000235939 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000235939 Gene

Genomic Locations for ENSG00000235939 Gene
chr10:49,419,277-49,472,903
(GRCh38/hg38)
Size:
53,627 bases
Orientation:
Plus strand
chr10:50,627,323-50,680,949
(GRCh37/hg19)
Size:
53,627 bases
Orientation:
Plus strand

Genomic View for ENSG00000235939 Gene

Genes around ENSG00000235939 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000235939 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000235939 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000235939 Gene

Proteins for ENSG00000235939 Gene

Post-translational modifications for ENSG00000235939 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000235939 Gene

Domains & Families for ENSG00000235939 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000235939 Gene

Function for ENSG00000235939 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000235939 Gene

Localization for ENSG00000235939 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000235939 Gene

Pathways & Interactions for ENSG00000235939 Gene

PathCards logo

SuperPathways for ENSG00000235939 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000235939 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000235939 Gene

Drugs & Compounds for ENSG00000235939 Gene

No Compound Related Data Available

Transcripts for ENSG00000235939 Gene

mRNA/cDNA for ENSG00000235939 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LncBook transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000235939 Gene

No ASD Table

Relevant External Links for ENSG00000235939 Gene

GeneLoc Exon Structure for
ENSG00000235939

Expression for ENSG00000235939 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000235939 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000235939 Gene

This gene is overexpressed in Minor Salivary Gland (x6.0), Esophagus - Mucosa (x4.7), and Prostate (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000235939: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000235939 Gene

Orthologs for ENSG00000235939 Gene

Evolution for ENSG00000235939 Gene

ENSEMBL:
Gene Tree for ENSG00000235939 (if available)
TreeFam:
Gene Tree for ENSG00000235939 (if available)

No data available for Orthologs for ENSG00000235939 Gene

Paralogs for ENSG00000235939 Gene

No data available for Paralogs for ENSG00000235939 Gene

Variants for ENSG00000235939 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000235939 Gene

Disorders for ENSG00000235939 Gene

No disorders were found for ENSG00000235939 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000235939 Gene

Publications for ENSG00000235939 Gene

No publications were found for ENSG00000235939 Gene.

No data available for External Links for ENSG00000235939 Gene

Products for ENSG00000235939 Gene

Sources for ENSG00000235939 Gene