ENSG00000235888 Gene (RNA Gene)

 

GC21M038988
GIFtS:
8
See more...

Aliases for ENSG00000235888 Gene

Subcategory (RNA class) for ENSG00000235888 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000235888 Gene

  • Novel Transcript 5
  • NONHSAG032853.2 91
  • NONHSAG032857.2 91
  • NONHSAG032856.2 91
  • NONHSAG032852.2 91
  • NONHSAG032855.2 91
  • HSALNG0133104 164
  • HSALNG0133099 164
  • Lnc-PSMG1-4 165
  • AF064858.1 5

External Ids for ENSG00000235888 Gene

Previous GeneCards Identifiers for ENSG00000235888 Gene

  • GC21M040360

Summaries for ENSG00000235888 Gene

GeneCards Summary for ENSG00000235888 Gene

ENSG00000235888 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000235888 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000235888 Gene

Genomics for ENSG00000235888 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000235888 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21J039093 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 12.4 -33.8 -33756 6.6 CREB1 GATAD2A CTCF ATF7 PRDM10 REST ZNF629 TFE3 LEF1 SOX13 ETS2 ENSG00000235888 RPSAP64 HMGN1 LCA5L piR-48325-111 piR-48325-110 PSMG1
GH21J038983 Promoter/Enhancer 2.3 VISTA FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.9 +73.3 73304 11.6 GATAD2A YBX1 PRDM10 ZNF629 TFE3 ZNF512 LEF1 SOX13 IKZF1 NFKBIZ HMGN1 ETS2 ENSG00000235888 ERG LINC01700 lnc-ETS2-4 LOC102724740 PSMG1
GH21J039079 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 9.1 -17.0 -16951 0.4 GATAD2A NFKBIZ RCOR2 RXRB IRF2 SP1 CEBPA SOX13 EGR1 CEBPB lnc-PSMG1-4 ETS2 ENSG00000235888 LOC107985484 PSMG1
GH21J039088 Enhancer 0.8 ENCODE dbSUPER 10.6 -26.4 -26378 1.2 IKZF1 REST CTCF CEBPB JUND ZNF189 RAD21 FOSL2 ZFP64 JUN piR-48325-110 ENSG00000235888 LCA5L LOC107985484 PSMG1 ETS2
GH21J039087 Enhancer 0.7 ENCODE CraniofacialAtlas dbSUPER 11.7 -24.8 -24752 1.5 CTCF NR2F1 piR-48325-110 ENSG00000235888 LOC107985484 PSMG1 ETS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000235888 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000235888 Gene

Genomic Locations for ENSG00000235888 Gene
chr21:38,988,569-39,062,894
(GRCh38/hg38)
Size:
74,326 bases
Orientation:
Minus strand
chr21:40,360,633-40,378,079
(GRCh37/hg19)
Size:
17,447 bases
Orientation:
Minus strand

Genomic View for ENSG00000235888 Gene

Genes around ENSG00000235888 on UCSC Golden Path with GeneCards custom track
ENSG00000235888 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000235888 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000235888 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000235888 Gene

Proteins for ENSG00000235888 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000235888 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000235888 Gene

Domains & Families for ENSG00000235888 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000235888 Gene

Function for ENSG00000235888 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000235888 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000235888 Gene

Localization for ENSG00000235888 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000235888 Gene

Pathways & Interactions for ENSG00000235888 Gene

PathCards logo

SuperPathways for ENSG00000235888 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000235888 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000235888 Gene

Drugs & Compounds for ENSG00000235888 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000235888 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000235888 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000D9B61_9606 lncRNA 509 4

Ensembl: ENST00000419664 (view in UCSC) ,

LncBook: HSALNT0273649,

LNCipedia: lnc-PSMG1-4:14,

NONCODE: NONHSAT082137.2,

URS0000E73868_9606 lncRNA 5629 1

Ensembl: ENST00000652155 (view in UCSC) ,

URS0000EEB6FF_9606 lncRNA 2052 1

Ensembl: ENST00000655642 (view in UCSC) ,

URS0000EF64D1_9606 lncRNA 1953 1

Ensembl: ENST00000417335 (view in UCSC) ,

URS0000EEFA74_9606 lncRNA 987 1

Ensembl: ENST00000666868 (view in UCSC) ,

ENSG00000235888 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000235888 Gene

No ASD Table

Relevant External Links for ENSG00000235888 Gene

GeneLoc Exon Structure for
ENSG00000235888

No data available for mRNA/cDNA for ENSG00000235888 Gene

Expression for ENSG00000235888 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000235888 Gene

mRNA expression in normal human tissues for ENSG00000235888 Gene
mRNA expression by GTEx for ENSG00000235888 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000235888 Gene

This gene is overexpressed in Whole Blood (x7.2) and Spleen (x5.4).
genes like me logo Genes that share expression patterns with ENSG00000235888: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000235888 Gene

Orthologs for ENSG00000235888 Gene

Evolution for ENSG00000235888 Gene

ENSEMBL:
Gene Tree for ENSG00000235888 (if available)
TreeFam:
Gene Tree for ENSG00000235888 (if available)

No data available for Orthologs for ENSG00000235888 Gene

Paralogs for ENSG00000235888 Gene

No data available for Paralogs for ENSG00000235888 Gene

Variants for ENSG00000235888 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000235888 Gene

Disorders for ENSG00000235888 Gene

Additional Disease Information for ENSG00000235888

Open Targets Platform

No disorders were found for ENSG00000235888 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000235888 Gene

Publications for ENSG00000235888 Gene

No publications were found for ENSG00000235888 Gene.

No data available for Mastermind for ENSG00000235888 Gene

Products for ENSG00000235888 Gene

Sources for ENSG00000235888 Gene