Aliases for ENSG00000235862 Gene

Subcategory (RNA class) for ENSG00000235862 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000235862 Gene

  • Novel Transcript 5
  • Lnc-BATF3-2 165
  • AL590648.2 5

External Ids for ENSG00000235862 Gene

Previous GeneCards Identifiers for ENSG00000235862 Gene

  • GC01M212797

Summaries for ENSG00000235862 Gene

GeneCards Summary for ENSG00000235862 Gene

ENSG00000235862 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000235862 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000235862 Gene

Genomics for ENSG00000235862 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000235862 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J212628 Enhancer 0.3 Ensembl 600.7 -1.4 -1430 0.4 GATA2 ENSG00000235862 FAM71A LOC100129948 LINC02773 BATF3
GH01J212594 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 11.6 +30.3 30315 3.3 SP1 CREB1 CTCF TEAD4 PRDM10 ZNF629 RFX1 LEF1 ZNF692 ZNF174 ATF3 FAM71A ENSG00000235862 BATF3 ANGEL2 PACC1 PPP2R5A lnc-BATF3-8
GH01J212476 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.5 +149.0 148998 1.7 SP1 CTCF ZNF629 BACH1 JUND LARP7 ZNF143 RELA REST ZNF24 LINC02771 ATF3 NENF ENSG00000235862 FAM71A BATF3 PACC1 RPL21P28 ENSG00000212187 VASH2
GH01J212681 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.8 -54.5 -54529 10.2 SP1 PRDM10 POLR2A BACH1 ETV6 LARP7 JUND PRDM1 RELA ZIC2 ATF3 ENSG00000235862 FAM71A VASH2 BATF3 RPL21P28 FLVCR1-DT RPS6KC1 SPATA45 TATDN3
GH01J212469 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +156.8 156770 2 JUND CEBPB FOS FOSL1 FOSL2 DPF2 BHLHE40 ZNF687 NRF1 RAD21 LINC02771 NENF FAM71A ENSG00000235862 ATF3 PACC1 BATF3 ENSG00000212187 VASH2 MG828462
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000235862 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000235862 Gene

Genomic Locations for ENSG00000235862 Gene
chr1:212,624,284-212,626,771
(GRCh38/hg38)
Size:
2,488 bases
Orientation:
Minus strand
chr1:212,797,626-212,800,113
(GRCh37/hg19)
Size:
2,488 bases
Orientation:
Minus strand

Genomic View for ENSG00000235862 Gene

Genes around ENSG00000235862 on UCSC Golden Path with GeneCards custom track
ENSG00000235862 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000235862 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000235862 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000235862 Gene

Proteins for ENSG00000235862 Gene

Post-translational modifications for ENSG00000235862 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000235862 Gene

Domains & Families for ENSG00000235862 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000235862 Gene

Function for ENSG00000235862 Gene

Phenotypes From GWAS Catalog for ENSG00000235862 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000235862 Gene

Localization for ENSG00000235862 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000235862 Gene

Pathways & Interactions for ENSG00000235862 Gene

PathCards logo

SuperPathways for ENSG00000235862 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000235862 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000235862 Gene

Drugs & Compounds for ENSG00000235862 Gene

No Compound Related Data Available

Transcripts for ENSG00000235862 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000235862 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000046C40E_9606 lncRNA 2225 2

Ensembl: ENST00000427949 (view in UCSC) ,

LNCipedia: lnc-BATF3-2:15,

URS0000D5B398_9606 lncRNA 13747 1

LNCipedia: lnc-BATF3-2:13,

ENSG00000235862 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000235862 Gene

No ASD Table

Relevant External Links for ENSG00000235862 Gene

GeneLoc Exon Structure for
ENSG00000235862

No data available for mRNA/cDNA for ENSG00000235862 Gene

Expression for ENSG00000235862 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000235862 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000235862 Gene

This gene is overexpressed in Testis (x49.4).
genes like me logo Genes that share expression patterns with ENSG00000235862: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000235862 Gene

Orthologs for ENSG00000235862 Gene

Evolution for ENSG00000235862 Gene

ENSEMBL:
Gene Tree for ENSG00000235862 (if available)
TreeFam:
Gene Tree for ENSG00000235862 (if available)

No data available for Orthologs for ENSG00000235862 Gene

Paralogs for ENSG00000235862 Gene

No data available for Paralogs for ENSG00000235862 Gene

Variants for ENSG00000235862 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000235862 Gene

Disorders for ENSG00000235862 Gene

No disorders were found for ENSG00000235862 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000235862 Gene

Publications for ENSG00000235862 Gene

No publications were found for ENSG00000235862 Gene.

No data available for Mastermind for ENSG00000235862 Gene

Products for ENSG00000235862 Gene

Sources for ENSG00000235862 Gene