Aliases for ENSG00000235545 Gene

Subcategory (RNA class) for ENSG00000235545 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000235545 Gene

  • Novel Transcript 5
  • NONHSAG001683.2 91
  • HSALNG0004080 164
  • Lnc-ATG4C-2 165
  • AC103923.1 5

External Ids for ENSG00000235545 Gene

Previous GeneCards Identifiers for ENSG00000235545 Gene

  • GC01P063154

Summaries for ENSG00000235545 Gene

GeneCards Summary for ENSG00000235545 Gene

ENSG00000235545 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000235545 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000235545 Gene

Genomics for ENSG00000235545 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000235545 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J062686 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 572 6.1 GATAD2A PRDM10 ZNF629 IKZF1 RCOR2 BACH1 JUND LARP7 PRDM1 ZNF143 DOCK7 ATG4C ENSG00000235545 ITGB3BP USP1 piR-59769-017
GH01J063522 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 10.4 +834.8 834846 3.1 SP1 CREB1 GATAD2A PRDM10 REST ZNF629 TFE3 RFX1 SIX5 LEF1 ITGB3BP EFCAB7 ALG6 FOXD3-AS1 FOXD3 ENSG00000235545 ROR1 ATG4C DOCK7 ENSG00000236674
GH01J062267 Enhancer 0.6 Ensembl 10.4 -422.0 -421981 0.2 ZNF239 HES1 ZNF157 ZNF18 ZNF133 ZNF169 ZNF473 ZFP41 ZNF155 ZNF488 USP1 ENSG00000235545 DOCK7 L1TD1 RF00017-231 RF00026-044 RNU6-371P KANK4
GH01J062706 Enhancer 0.5 ENCODE 0.4 +18.7 18654 0.6 ZNF600 ZBTB44 GATA3 TRIM28 MZF1 piR-57133-024 piR-33605-006 ENSG00000235545 DOCK7 ATG4C
GH01J062708 Enhancer 0.4 ENCODE 0.4 +19.1 19144 0 ZNF600 GATA3 TRIM28 MZF1 piR-57133-024 DOCK7 piR-33605-006 ENSG00000235545 ATG4C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000235545 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000235545 Gene

Genomic Locations for ENSG00000235545 Gene
chr1:62,688,482-62,710,695
(GRCh38/hg38)
Size:
22,214 bases
Orientation:
Plus strand
chr1:63,154,153-63,176,365
(GRCh37/hg19)
Size:
22,213 bases
Orientation:
Plus strand

Genomic View for ENSG00000235545 Gene

Genes around ENSG00000235545 on UCSC Golden Path with GeneCards custom track
ENSG00000235545 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000235545 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000235545 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000235545 Gene

Proteins for ENSG00000235545 Gene

Post-translational modifications for ENSG00000235545 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000235545 Gene

Domains & Families for ENSG00000235545 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000235545 Gene

Function for ENSG00000235545 Gene

Phenotypes From GWAS Catalog for ENSG00000235545 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000235545 Gene

Localization for ENSG00000235545 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000235545 Gene

Pathways & Interactions for ENSG00000235545 Gene

PathCards logo

SuperPathways for ENSG00000235545 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000235545 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000235545 Gene

Drugs & Compounds for ENSG00000235545 Gene

No Compound Related Data Available

Transcripts for ENSG00000235545 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000235545 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001C31FC_9606 lncRNA 1228 3

Ensembl: ENST00000453229 (view in UCSC) ,

LNCipedia: lnc-ATG4C-2:1, lnc-ATG4C-2:6,

NONCODE: NONHSAT003639.2,

URS0000D5CFF0_9606 lncRNA 728 2

LncBook: HSALNT0008032,

LNCipedia: lnc-ATG4C-2:4,

URS0000D5D173_9606 lncRNA 12326 1

LNCipedia: lnc-ATG4C-2:5,

URS00009B1032_9606 lncRNA 1228 1

NONCODE: NONHSAT149076.1,

ENSG00000235545 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000235545 Gene

No ASD Table

Relevant External Links for ENSG00000235545 Gene

GeneLoc Exon Structure for
ENSG00000235545

No data available for mRNA/cDNA for ENSG00000235545 Gene

Expression for ENSG00000235545 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000235545 Gene

Orthologs for ENSG00000235545 Gene

Evolution for ENSG00000235545 Gene

ENSEMBL:
Gene Tree for ENSG00000235545 (if available)
TreeFam:
Gene Tree for ENSG00000235545 (if available)

No data available for Orthologs for ENSG00000235545 Gene

Paralogs for ENSG00000235545 Gene

No data available for Paralogs for ENSG00000235545 Gene

Variants for ENSG00000235545 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000235545 Gene

Disorders for ENSG00000235545 Gene

Additional Disease Information for ENSG00000235545

No disorders were found for ENSG00000235545 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000235545 Gene

Publications for ENSG00000235545 Gene

No publications were found for ENSG00000235545 Gene.

No data available for Mastermind for ENSG00000235545 Gene

Products for ENSG00000235545 Gene

Sources for ENSG00000235545 Gene