Aliases for ENSG00000234699 Gene

Subcategory (RNA class) for ENSG00000234699 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000234699 Gene

  • Novel Transcript 5
  • NONHSAG006779.2 91
  • HSALNG0080366 164
  • Lnc-PDCD11-1 165
  • AL139339.1 5

External Ids for ENSG00000234699 Gene

Previous GeneCards Identifiers for ENSG00000234699 Gene

  • GC10P105212

Summaries for ENSG00000234699 Gene

GeneCards Summary for ENSG00000234699 Gene

ENSG00000234699 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000234699 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000234699 Gene

Genomics for ENSG00000234699 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000234699 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J103448 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -2.0 -1963 5 PRDM10 TARDBP ZHX2 LARP7 ZIC2 PATZ1 POLR2A ZNF600 PKNOX1 ZFX CALHM2 ENSG00000273485 ENSG00000234699 lnc-CALHM1-1 PDCD11 CALHM1
GH10J103526 Enhancer 1 Ensembl ENCODE 10.8 +74.8 74782 3.7 ATF7 RFX1 JUND DDX20 ZNF311 SOX6 FOXJ2 CEBPA ZNF639 CEBPB PCGF6 PDCD11 ENSG00000260461 NEURL1 ENSG00000234699 CALHM2 CALHM1 SH3PXD2A NEURL1-AS1 hsa-miR-5095-053
GH10J103417 Enhancer 0.5 ENCODE 12.1 -35.8 -35827 0.2 CTCF REST RAD21 TRIM22 RUNX3 SMC3 ZNF654 ENSG00000234699 CALHM2 NEURL1 PDCD11 ATP5MD MIR1307 CALHM1 NEURL1-AS1 RF00017-793 ENSG00000273485
GH10J103416 Enhancer 0.4 ENCODE 12.1 -36.0 -36027 0.2 CTCF TRIM22 RAD21 ENSG00000234699 CALHM2 NEURL1 PDCD11 ATP5MD MIR1307 CALHM1 NEURL1-AS1 RF00017-793 ENSG00000273485
GH10J103459 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 0.4 +6.1 6105 0.3 USF1 ZFHX2 EBF1 RFX5 MAZ BHLHE40 EGR2 CALHM1 ENSG00000234699 CALHM3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000234699 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000234699 Gene

Genomic Locations for ENSG00000234699 Gene
chr10:103,452,846-103,462,696
(GRCh38/hg38)
Size:
9,851 bases
Orientation:
Plus strand
chr10:105,212,603-105,222,452
(GRCh37/hg19)
Size:
9,850 bases
Orientation:
Plus strand

Genomic View for ENSG00000234699 Gene

Genes around ENSG00000234699 on UCSC Golden Path with GeneCards custom track
ENSG00000234699 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000234699 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000234699 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000234699 Gene

Proteins for ENSG00000234699 Gene

Post-translational modifications for ENSG00000234699 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000234699 Gene

Domains & Families for ENSG00000234699 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000234699 Gene

Function for ENSG00000234699 Gene

Phenotypes From GWAS Catalog for ENSG00000234699 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000234699 Gene

Localization for ENSG00000234699 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000234699 Gene

Pathways & Interactions for ENSG00000234699 Gene

PathCards logo

SuperPathways for ENSG00000234699 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000234699 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000234699 Gene

Drugs & Compounds for ENSG00000234699 Gene

No Compound Related Data Available

Transcripts for ENSG00000234699 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000234699 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000225186_9606 lncRNA 657 4

Ensembl: ENST00000411906 (view in UCSC) ,

LncBook: HSALNT0167535,

LNCipedia: lnc-PDCD11-1:1,

NONCODE: NONHSAT016180.2,

URS00009AE71C_9606 lncRNA 657 2

LncBook: HSALNT0167536,

NONCODE: NONHSAT156020.1,

ENSG00000234699 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000234699 Gene

No ASD Table

Relevant External Links for ENSG00000234699 Gene

GeneLoc Exon Structure for
ENSG00000234699

No data available for mRNA/cDNA for ENSG00000234699 Gene

Expression for ENSG00000234699 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000234699 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000234699 Gene

This gene is overexpressed in Cervix - Ectocervix (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000234699: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000234699 Gene

Orthologs for ENSG00000234699 Gene

Evolution for ENSG00000234699 Gene

ENSEMBL:
Gene Tree for ENSG00000234699 (if available)
TreeFam:
Gene Tree for ENSG00000234699 (if available)

No data available for Orthologs for ENSG00000234699 Gene

Paralogs for ENSG00000234699 Gene

No data available for Paralogs for ENSG00000234699 Gene

Variants for ENSG00000234699 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000234699 Gene

Disorders for ENSG00000234699 Gene

Additional Disease Information for ENSG00000234699

No disorders were found for ENSG00000234699 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000234699 Gene

Publications for ENSG00000234699 Gene

No publications were found for ENSG00000234699 Gene.

No data available for Mastermind for ENSG00000234699 Gene

Products for ENSG00000234699 Gene

Sources for ENSG00000234699 Gene