Aliases for ENSG00000234580 Gene

Subcategory (RNA class) for ENSG00000234580 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000234580 Gene

  • Novel Transcript 5
  • NONHSAG005749.2 91
  • HSALNG0077623 164
  • Lnc-CXCL12-3 165
  • AL356157.1 5

External Ids for ENSG00000234580 Gene

Previous GeneCards Identifiers for ENSG00000234580 Gene

  • GC10M045086

Summaries for ENSG00000234580 Gene

GeneCards Summary for ENSG00000234580 Gene

ENSG00000234580 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000234580 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000234580 Gene

Genomics for ENSG00000234580 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000234580 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J044627 Enhancer 0.8 Ensembl ENCODE 0.3 -26.7 -26677 2.4 CTCF CEBPB NFE2 ZNF316 MAFF FOS MAFK MAFG NFE2L2 RAD21 ENSG00000234580 lnc-DEPP1-5 CXCL12 TMEM72
GH10J044650 Enhancer 0.6 Ensembl ENCODE 0.3 -49.2 -49159 1.3 RUNX3 CTCF MAFK JUNB TCF7 CXCL12 ENSG00000234580 lnc-DEPP1-5 TMEM72
GH10J044647 Enhancer 0.6 Ensembl ENCODE 0.3 -46.0 -45996 1 BHLHE40 MAFK ZNF24 ENSG00000234580 lnc-DEPP1-5 CXCL12 TMEM72
GH10J044696 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.2 -94.8 -94805 1.5 FOXA2 FOXP1 FOXA3 ZNF644 HNF1A lnc-DEPP1-5 ENSG00000234580 TMEM72 CXCL12
GH10J044752 Enhancer 1.1 Ensembl ENCODE 0.1 -151.1 -151095 2 ZNF221 PRDM10 ZNF629 ZNF692 ZNF174 FOXA1 ZNF776 ZIC2 ZSCAN4 PATZ1 WASHC2C FAM21FP HNRNPA3P1 AGAP10P ZNF22-AS1 ZFAND4 lnc-DEPP1-5 ENSG00000234580 TMEM72 CXCL12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000234580 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000234580 Gene

Genomic Locations for ENSG00000234580 Gene
chr10:44,591,208-44,602,105
(GRCh38/hg38)
Size:
10,898 bases
Orientation:
Minus strand
chr10:45,086,656-45,097,552
(GRCh37/hg19)
Size:
10,897 bases
Orientation:
Minus strand

Genomic View for ENSG00000234580 Gene

Genes around ENSG00000234580 on UCSC Golden Path with GeneCards custom track
ENSG00000234580 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000234580 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000234580 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000234580 Gene

Proteins for ENSG00000234580 Gene

Post-translational modifications for ENSG00000234580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000234580 Gene

Domains & Families for ENSG00000234580 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000234580 Gene

Function for ENSG00000234580 Gene

Phenotypes From GWAS Catalog for ENSG00000234580 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000234580 Gene

Localization for ENSG00000234580 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000234580 Gene

Pathways & Interactions for ENSG00000234580 Gene

PathCards logo

SuperPathways for ENSG00000234580 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000234580 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000234580 Gene

Drugs & Compounds for ENSG00000234580 Gene

No Compound Related Data Available

Transcripts for ENSG00000234580 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000234580 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002B4AD2_9606 lncRNA 732 3

Ensembl: ENST00000456722 (view in UCSC) ,

LNCipedia: lnc-CXCL12-3:1,

NONCODE: NONHSAT013039.2,

URS00009BB28E_9606 lncRNA 732 2

LncBook: HSALNT0162058,

NONCODE: NONHSAT156951.1,

ENSG00000234580 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000234580 Gene

No ASD Table

Relevant External Links for ENSG00000234580 Gene

GeneLoc Exon Structure for
ENSG00000234580

No data available for mRNA/cDNA for ENSG00000234580 Gene

Expression for ENSG00000234580 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000234580 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000234580 Gene

This gene is overexpressed in Testis (x18.5), Brain - Caudate (basal ganglia) (x11.5), Kidney - Cortex (x7.5), Brain - Putamen (basal ganglia) (x4.6), and Brain - Amygdala (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000234580: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000234580 Gene

Orthologs for ENSG00000234580 Gene

Evolution for ENSG00000234580 Gene

ENSEMBL:
Gene Tree for ENSG00000234580 (if available)
TreeFam:
Gene Tree for ENSG00000234580 (if available)

No data available for Orthologs for ENSG00000234580 Gene

Paralogs for ENSG00000234580 Gene

No data available for Paralogs for ENSG00000234580 Gene

Variants for ENSG00000234580 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000234580 Gene

Disorders for ENSG00000234580 Gene

No disorders were found for ENSG00000234580 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000234580 Gene

Publications for ENSG00000234580 Gene

No publications were found for ENSG00000234580 Gene.

No data available for Mastermind for ENSG00000234580 Gene

Products for ENSG00000234580 Gene

Sources for ENSG00000234580 Gene