Aliases for ENSG00000232993 Gene

Data sources for ENSG00000232993 Gene:

RNA type for ENSG00000232993 Gene

lncRNA

Aliases for ENSG00000232993 Gene

External Ids for ENSG00000232993 Gene

Previous GeneCards Identifiers for ENSG00000232993 Gene

  • GC01M053535

Summaries for ENSG00000232993 Gene

GeneCards Summary for ENSG00000232993 Gene

ENSG00000232993 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000232993 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000232993 Gene

Genomics for ENSG00000232993 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000232993 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J053081 Enhancer 0.8 Ensembl dbSUPER 0.7 +2.2 2201 3.8 ZNF513 KLF9 PHF20 KLF1 ZNF184 RAD21 EGR2 KDM1A CTBP1 MNT ENSG00000235563 SLC1A7 TCEANC2 ENSG00000232993 HIGD1AP11 PODN
GH01J053074 Enhancer 0.4 Ensembl CraniofacialAtlas 0.4 +11.4 11358 0.8 HLF HIGD1AP11 hsa-miR-5095-018 lnc-SLC1A7-3 ENSG00000235563 ENSG00000232993 PODN SLC1A7
GH01J053075 Enhancer 0.3 Ensembl 0.4 +10.3 10301 0.4 ZFP36 ZMYM3 HIGD1AP11 lnc-SLC1A7-3 ENSG00000232993 PODN SLC1A7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000232993 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000232993 Gene

Latest Assembly
chr1:53,069,937-53,085,502
(GRCh38/hg38)
Size:
15,566 bases
Orientation:
Minus strand

Previous Assembly
chr1:53,535,610-53,551,174
(GRCh37/hg19 by Ensembl)
Size:
15,565 bases
Orientation:
Minus strand

Genomic View for ENSG00000232993 Gene

Genes around ENSG00000232993 on UCSC Golden Path with GeneCards custom track
ENSG00000232993 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000232993 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000232993 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000232993 Gene

Proteins for ENSG00000232993 Gene

Post-translational modifications for ENSG00000232993 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000232993 Gene

Domains & Families for ENSG00000232993 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000232993 Gene

Function for ENSG00000232993 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000232993 Gene

Localization for ENSG00000232993 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000232993 Gene

Pathways & Interactions for ENSG00000232993 Gene

PathCards logo

SuperPathways for ENSG00000232993 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000232993 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000232993 Gene

Drugs & Compounds for ENSG00000232993 Gene

No Compound Related Data Available

Transcripts for ENSG00000232993 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000232993 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003D8393_9606 lncRNA 467 4

Ensembl: ENST00000447867 (view in UCSC) ,

LncBook: HSALNT0006868,

LNCipedia: lnc-SLC1A7-1:1,

NONCODE: NONHSAT003284.2,

ENSG00000232993 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000232993 Gene

No ASD Table

Relevant External Links for ENSG00000232993 Gene

GeneLoc Exon Structure for
ENSG00000232993

No data available for mRNA/cDNA for ENSG00000232993 Gene

Expression for ENSG00000232993 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000232993 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000232993 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000232993: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000232993 Gene

Orthologs for ENSG00000232993 Gene

Evolution for ENSG00000232993 Gene

ENSEMBL:
Gene Tree for ENSG00000232993 (if available)
TreeFam:
Gene Tree for ENSG00000232993 (if available)

No data available for Orthologs for ENSG00000232993 Gene

Paralogs for ENSG00000232993 Gene

No data available for Paralogs for ENSG00000232993 Gene

Variants for ENSG00000232993 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000232993 Gene

Disorders for ENSG00000232993 Gene

No disorders were found for ENSG00000232993 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000232993 Gene

Publications for ENSG00000232993 Gene

No publications were found for ENSG00000232993 Gene.

No data available for Mastermind for ENSG00000232993 Gene

Products for ENSG00000232993 Gene

Sources for ENSG00000232993 Gene