Aliases for ENSG00000232855 Gene

Subcategory (RNA class) for ENSG00000232855 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ENSG00000232855 Gene

  • Novel Transcript 5
  • NONHSAG032604.2 91
  • HSALNG0132496 164
  • Lnc-N6AMT1-1 165
  • AF165147.1 5

External Ids for ENSG00000232855 Gene

Previous GeneCards Identifiers for ENSG00000232855 Gene

  • GC21M029816
  • GC21M028440

Summaries for ENSG00000232855 Gene

GeneCards Summary for ENSG00000232855 Gene

ENSG00000232855 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000232855 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000232855 Gene

Genomics for ENSG00000232855 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000232855 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J029194 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.5 -358.6 -358594 5 SP1 GATAD2A CTCF PRDM10 ZNF629 IKZF1 ZNF7 ETV6 JUND FOXA1 BACH1 GRIK1-AS2 LINC00189 RPL23P2 USP16 MAP3K7CL CCT8 ENSG00000232855 GAPDHP14 GRIK1
GH21J028831 Enhancer 0.9 Ensembl ENCODE 7.3 +2.4 2378 7.6 ZNF629 ZNF512 IKZF1 ZNF692 JUND FOXA1 DPF2 SOX6 HMBOX1 NFE2 CCT8 ENSG00000231125 RPL12P9 N6AMT1 ENSG00000232855 ENSG00000224649 LTN1 LINC00189 piR-40110-438
GH21J028822 Enhancer 0.9 Ensembl ENCODE 7.4 +14.0 13977 2.8 FOXA1 TCF7L2 JUND ZNF316 MAFF MAFK NR2F2 FOXM1 PRDM1 GATA3 CCT8 ENSG00000232855 piR-40110-438 N6AMT1
GH21J028805 Enhancer 0.7 Ensembl ENCODE 7 +30.9 30877 2.2 SP1 ZBTB20 ZNF184 FOS MAFK ATF4 ZFP64 NFE2L2 BACH1 CBFA2T3 ENSG00000232855 CCT8 LTN1 piR-40110-438 piR-50129-142 N6AMT1
GH21J028580 Enhancer 0.6 Ensembl ENCODE 5.3 +255.9 255882 1.8 POLR2A USF1 ETS1 ENSG00000232855 LTN1 piR-32023-132 piR-56759-361 N6AMT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000232855 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000232855 Gene

Genomic Locations for ENSG00000232855 Gene
chr21:28,328,738-28,836,778
(GRCh38/hg38)
Size:
508,041 bases
Orientation:
Minus strand
chr21:29,811,667-30,047,170
(GRCh37/hg19)
Size:
235,504 bases
Orientation:
Minus strand

Genomic View for ENSG00000232855 Gene

Genes around ENSG00000232855 on UCSC Golden Path with GeneCards custom track
ENSG00000232855 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000232855 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000232855 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000232855 Gene

Proteins for ENSG00000232855 Gene

Post-translational modifications for ENSG00000232855 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000232855 Gene

Domains & Families for ENSG00000232855 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000232855 Gene

Function for ENSG00000232855 Gene

Phenotypes From GWAS Catalog for ENSG00000232855 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000232855 Gene

Localization for ENSG00000232855 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000232855 Gene

Pathways & Interactions for ENSG00000232855 Gene

PathCards logo

SuperPathways for ENSG00000232855 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000232855 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000232855 Gene

Drugs & Compounds for ENSG00000232855 Gene

No Compound Related Data Available

Transcripts for ENSG00000232855 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000232855 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000230FE7_9606 lncRNA 683 3

Ensembl: ENST00000430247 (view in UCSC) ,

LNCipedia: lnc-N6AMT1-1:3,

NONCODE: NONHSAT081598.2,

URS0000787615_9606 lncRNA 6103 2

Ensembl: ENST00000433310 (view in UCSC) ,

LNCipedia: lnc-N6AMT1-1:5,

URS00002708E9_9606 lncRNA 443 2

Ensembl: ENST00000452028 (view in UCSC) ,

LNCipedia: lnc-N6AMT1-1:2,

URS0000EF3609_9606 lncRNA 2702 1

Ensembl: ENST00000657148 (view in UCSC) ,

URS0000EEF427_9606 lncRNA 1027 1

Ensembl: ENST00000654020 (view in UCSC) ,

ENSG00000232855 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000232855 Gene

No ASD Table

Relevant External Links for ENSG00000232855 Gene

GeneLoc Exon Structure for
ENSG00000232855

No data available for mRNA/cDNA for ENSG00000232855 Gene

Expression for ENSG00000232855 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000232855 Gene

mRNA expression in normal human tissues for ENSG00000232855 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000232855 Gene

This gene is overexpressed in Bladder (x7.6) and Esophagus - Muscularis (x6.5).
genes like me logo Genes that share expression patterns with ENSG00000232855: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000232855 Gene

Orthologs for ENSG00000232855 Gene

Evolution for ENSG00000232855 Gene

ENSEMBL:
Gene Tree for ENSG00000232855 (if available)
TreeFam:
Gene Tree for ENSG00000232855 (if available)

No data available for Orthologs for ENSG00000232855 Gene

Paralogs for ENSG00000232855 Gene

No data available for Paralogs for ENSG00000232855 Gene

Variants for ENSG00000232855 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000232855 Gene

Disorders for ENSG00000232855 Gene

Additional Disease Information for ENSG00000232855

No disorders were found for ENSG00000232855 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000232855 Gene

Publications for ENSG00000232855 Gene

No publications were found for ENSG00000232855 Gene.

No data available for Mastermind for ENSG00000232855 Gene

Products for ENSG00000232855 Gene

Sources for ENSG00000232855 Gene