Aliases for ENSG00000232408 Gene

Data sources for ENSG00000232408 Gene:

RNA type for ENSG00000232408 Gene

lncRNA

Aliases for ENSG00000232408 Gene

External Ids for ENSG00000232408 Gene

Previous GeneCards Identifiers for ENSG00000232408 Gene

  • GC02M131341
  • GC02M130585
  • GC02M130587

Summaries for ENSG00000232408 Gene

GeneCards Summary for ENSG00000232408 Gene

ENSG00000232408 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000232408 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000232408 Gene

Genomics for ENSG00000232408 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000232408 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J130590 Enhancer 0.6 Ensembl dbSUPER 250.7 +1.2 1162 0.2 IKZF1 IKZF2 DPF2 ENSG00000232408 HSALNG0018830 piR-46320-002 CFC1 CFC1B
GH02J130592 Enhancer 0.4 Ensembl dbSUPER 250.7 -0.1 -138 0.8 ZNF18 ENSG00000232408 HSALNG0018830 CFC1 CFC1B
GH02J130583 Enhancer 0.2 dbSUPER 0.4 +6.3 6306 0.9 piR-46320-002 ENSG00000232408 PRSS40A CFC1 CFC1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000232408 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000232408 Gene

Latest Assembly
chr2:130,583,548-130,590,463
(GRCh38/hg38)
Size:
6,916 bases
Orientation:
Minus strand

Previous Assembly
chr2:131,341,122-131,348,036
(GRCh37/hg19 by Ensembl)
Size:
6,915 bases
Orientation:
Minus strand

Genomic View for ENSG00000232408 Gene

Genes around ENSG00000232408 on UCSC Golden Path with GeneCards custom track
ENSG00000232408 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000232408 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000232408 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000232408 Gene

Proteins for ENSG00000232408 Gene

Post-translational modifications for ENSG00000232408 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000232408 Gene

Domains & Families for ENSG00000232408 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000232408 Gene

Function for ENSG00000232408 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000232408 Gene

Localization for ENSG00000232408 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000232408 Gene

Pathways & Interactions for ENSG00000232408 Gene

PathCards logo

SuperPathways for ENSG00000232408 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000232408 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000232408 Gene

Drugs & Compounds for ENSG00000232408 Gene

No Compound Related Data Available

Transcripts for ENSG00000232408 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000232408 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000DBA64_9606 lncRNA 697 4

Ensembl: ENST00000457169 (view in UCSC) ,

LncBook: HSALNT0039821,

LNCipedia: lnc-CFC1-1:1,

NONCODE: NONHSAT074359.2,

URS0001BE4663_9606 lncRNA 695 1

LncBook: HSALNT0039821,

ENSG00000232408 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000232408 Gene

No ASD Table

Relevant External Links for ENSG00000232408 Gene

GeneLoc Exon Structure for
ENSG00000232408

No data available for mRNA/cDNA for ENSG00000232408 Gene

Expression for ENSG00000232408 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000232408 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000232408 Gene

This gene is overexpressed in Testis (x41.6).
genes like me logo Genes that share expression patterns with ENSG00000232408: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000232408 Gene

Orthologs for ENSG00000232408 Gene

Evolution for ENSG00000232408 Gene

ENSEMBL:
Gene Tree for ENSG00000232408 (if available)
TreeFam:
Gene Tree for ENSG00000232408 (if available)

No data available for Orthologs for ENSG00000232408 Gene

Paralogs for ENSG00000232408 Gene

No data available for Paralogs for ENSG00000232408 Gene

Variants for ENSG00000232408 Gene

Variation tolerance for ENSG00000232408 Gene

Gene Damage Index Score: 0.02; 0.41% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000232408 Gene

Disorders for ENSG00000232408 Gene

No disorders were found for ENSG00000232408 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000232408 Gene

Publications for ENSG00000232408 Gene

No publications were found for ENSG00000232408 Gene.

No data available for Mastermind for ENSG00000232408 Gene

Products for ENSG00000232408 Gene

Sources for ENSG00000232408 Gene