Aliases for ENSG00000232363 Gene

Subcategory (RNA class) for ENSG00000232363 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000232363 Gene

  • Novel Transcript 5
  • NONHSAG034137.2 91
  • HSALNG0135944 164
  • Lnc-SMC1B-1 165
  • AL021391.1 5

External Ids for ENSG00000232363 Gene

Previous GeneCards Identifiers for ENSG00000232363 Gene

  • GC22M045831

Summaries for ENSG00000232363 Gene

GeneCards Summary for ENSG00000232363 Gene

ENSG00000232363 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000232363 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000232363 Gene

Genomics for ENSG00000232363 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000232363 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J045448 Enhancer 0.4 Ensembl ENCODE 600.7 +0.2 214 0.9 ZNF623 ENSG00000232363 FAM118A RIBC2 FBLN1 MN298678-042
GH22J044676 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 5.3 +771.6 771571 2.3 HNRNPL GATAD2A PRDM10 TFE3 LEF1 IKZF1 KDM1A RCOR2 BACH1 JUND PRR5-ARHGAP8 ARHGAP8 ENSG00000232363 PRR5
GH22J045413 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +34.8 34844 1.8 BRCA1 KDM1A ZNF692 FOXA1 RFX1 EZH2 RFX3 SP1 CHD2 ZXDB RIBC2 SMC1B FAM118A ENSG00000232363 FBLN1 MN298678-042
GH22J045435 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 0.4 +13.1 13143 2.4 GATAD2A CTCF IKZF1 ZNF692 JUND PRDM1 ZNF143 RXRB REST RAD21 RIBC2 FAM118A SMC1B UPK3A NUP50 NUP50-DT ENSG00000232363 FBLN1 MN298678-042
GH22J045440 Enhancer 0.7 ENCODE 0.4 +5.7 5654 5.4 GATAD2A CTCF REST SOX13 ZBTB26 TGIF2 FOXA2 SMC3 MBD1 TEAD1 RIBC2 TTC38 ENSG00000232363 FBLN1 MN298678-042
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000232363 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000232363 Gene

Genomic Locations for ENSG00000232363 Gene
chr22:45,435,864-45,448,744
(GRCh38/hg38)
Size:
12,881 bases
Orientation:
Minus strand
chr22:45,831,744-45,844,624
(GRCh37/hg19)
Size:
12,881 bases
Orientation:
Minus strand

Genomic View for ENSG00000232363 Gene

Genes around ENSG00000232363 on UCSC Golden Path with GeneCards custom track
ENSG00000232363 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000232363 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000232363 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000232363 Gene

Proteins for ENSG00000232363 Gene

Post-translational modifications for ENSG00000232363 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000232363 Gene

Domains & Families for ENSG00000232363 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000232363 Gene

Function for ENSG00000232363 Gene

Phenotypes From GWAS Catalog for ENSG00000232363 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000232363 Gene

Localization for ENSG00000232363 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000232363 Gene

Pathways & Interactions for ENSG00000232363 Gene

PathCards logo

SuperPathways for ENSG00000232363 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000232363 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000232363 Gene

Drugs & Compounds for ENSG00000232363 Gene

No Compound Related Data Available

Transcripts for ENSG00000232363 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000232363 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003D178C_9606 lncRNA 545 3

Ensembl: ENST00000454439 (view in UCSC) ,

LNCipedia: lnc-SMC1B-1:1,

NONCODE: NONHSAT087230.2,

URS00009AD8C2_9606 lncRNA 545 2

LncBook: HSALNT0278746,

NONCODE: NONHSAT192979.1,

ENSG00000232363 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000232363 Gene

No ASD Table

Relevant External Links for ENSG00000232363 Gene

GeneLoc Exon Structure for
ENSG00000232363

No data available for mRNA/cDNA for ENSG00000232363 Gene

Expression for ENSG00000232363 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000232363 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000232363 Gene

This gene is overexpressed in Cervix - Ectocervix (x5.2) and Vagina (x4.7).
genes like me logo Genes that share expression patterns with ENSG00000232363: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000232363 Gene

Orthologs for ENSG00000232363 Gene

Evolution for ENSG00000232363 Gene

ENSEMBL:
Gene Tree for ENSG00000232363 (if available)
TreeFam:
Gene Tree for ENSG00000232363 (if available)

No data available for Orthologs for ENSG00000232363 Gene

Paralogs for ENSG00000232363 Gene

No data available for Paralogs for ENSG00000232363 Gene

Variants for ENSG00000232363 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000232363 Gene

Disorders for ENSG00000232363 Gene

No disorders were found for ENSG00000232363 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000232363 Gene

Publications for ENSG00000232363 Gene

No publications were found for ENSG00000232363 Gene.

No data available for Mastermind for ENSG00000232363 Gene

Products for ENSG00000232363 Gene

Sources for ENSG00000232363 Gene