Aliases for ENSG00000231990 Gene

Subcategory (RNA class) for ENSG00000231990 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000231990 Gene

  • Novel Transcript 5
  • NONHSAG052885.2 91
  • HSALNG0072861 164
  • Lnc-PTPDC1-2 165
  • AL442224.1 5

External Ids for ENSG00000231990 Gene

Previous GeneCards Identifiers for ENSG00000231990 Gene

  • GC09P096619
  • GC09P093858
  • GC09P093813

Summaries for ENSG00000231990 Gene

GeneCards Summary for ENSG00000231990 Gene

ENSG00000231990 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000231990 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000231990 Gene

Genomics for ENSG00000231990 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000231990 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J093807 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 600.7 -0.2 -248 2 RFX1 LEF1 EP300 ZNF184 ZBTB5 ZKSCAN1 NCOR1 EHMT2 NFIC STAT5A ENSG00000231990 hsa-miR-5095-512 BARX1 PHF2
GH09J093810 Enhancer 0.6 Ensembl CraniofacialAtlas 0.7 +2.0 2013 0.9 ZBTB33 EGR1 NFIC MEIS2 ENSG00000231990 MIR4291 BARX1 PHF2
GH09J093826 Enhancer 0.8 ENCODE CraniofacialAtlas 0.4 +19.0 18972 2 HNRNPL CTCF KDM1A PKNOX1 ZNF24 EZH2 YY1 EGR1 ZNF444 USF1 FGD3 MIR4291 ENSG00000231990 LOC101928014 BARX1 PHF2
GH09J093813 Enhancer 0.5 Ensembl 0.4 +6.4 6406 1.3 CTCF POLR2A GTF2F1 FOXA2 SPI1 SIN3A SMARCA4 RAD21 MIR4291 ENSG00000231990 BARX1 PHF2
GH09J093811 Enhancer 0.3 Ensembl 0.7 +2.8 2754 0.2 ZBTB33 ENSG00000231990 MIR4291 BARX1 PHF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000231990 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000231990 Gene

Genomic Locations for ENSG00000231990 Gene
chr9:93,808,347-93,858,340
(GRCh38/hg38)
Size:
49,994 bases
Orientation:
Plus strand

Genomic View for ENSG00000231990 Gene

Genes around ENSG00000231990 on UCSC Golden Path with GeneCards custom track
ENSG00000231990 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000231990 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000231990 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000231990 Gene

Proteins for ENSG00000231990 Gene

Post-translational modifications for ENSG00000231990 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000231990 Gene

Domains & Families for ENSG00000231990 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000231990 Gene

Function for ENSG00000231990 Gene

Phenotypes From GWAS Catalog for ENSG00000231990 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000231990 Gene

Localization for ENSG00000231990 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000231990 Gene

Pathways & Interactions for ENSG00000231990 Gene

PathCards logo

SuperPathways for ENSG00000231990 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000231990 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000231990 Gene

Drugs & Compounds for ENSG00000231990 Gene

No Compound Related Data Available

Transcripts for ENSG00000231990 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000231990 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF5EF6_9606 lncRNA 1494 1

Ensembl: ENST00000669339 (view in UCSC) ,

URS0000EF40D9_9606 lncRNA 786 1

Ensembl: ENST00000668608 (view in UCSC) ,

URS0000EF2A5B_9606 lncRNA 691 1

Ensembl: ENST00000443771 (view in UCSC) ,

URS00008B3DCA_9606 lncRNA 455 3

LncBook: HSALNT0152291,

LNCipedia: lnc-PTPDC1-2:2,

NONCODE: NONHSAT133279.2,

URS00009C08B2_9606 lncRNA 391 2

LncBook: HSALNT0152292,

NONCODE: NONHSAT219833.1,

ENSG00000231990 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000231990 Gene

No ASD Table

Relevant External Links for ENSG00000231990 Gene

GeneLoc Exon Structure for
ENSG00000231990

No data available for mRNA/cDNA for ENSG00000231990 Gene

Expression for ENSG00000231990 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000231990 Gene

Orthologs for ENSG00000231990 Gene

Evolution for ENSG00000231990 Gene

ENSEMBL:
Gene Tree for ENSG00000231990 (if available)
TreeFam:
Gene Tree for ENSG00000231990 (if available)

No data available for Orthologs for ENSG00000231990 Gene

Paralogs for ENSG00000231990 Gene

No data available for Paralogs for ENSG00000231990 Gene

Variants for ENSG00000231990 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000231990 Gene

Disorders for ENSG00000231990 Gene

Additional Disease Information for ENSG00000231990

No disorders were found for ENSG00000231990 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000231990 Gene

Publications for ENSG00000231990 Gene

No publications were found for ENSG00000231990 Gene.

No data available for Mastermind for ENSG00000231990 Gene

Products for ENSG00000231990 Gene

Sources for ENSG00000231990 Gene