ENSG00000230747 Gene (RNA Gene)

 

GC02M096308
GIFtS:
8
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Aliases for ENSG00000230747 Gene

Subcategory (RNA class) for ENSG00000230747 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000230747 Gene

  • Novel Transcript 5
  • NONHSAG028611.2 91
  • Lnc-SNRNP200-1 165
  • HSALNG0017036 164
  • AC021188.1 5

External Ids for ENSG00000230747 Gene

Previous GeneCards Identifiers for ENSG00000230747 Gene

  • GC02M096973

Summaries for ENSG00000230747 Gene

GeneCards Summary for ENSG00000230747 Gene

ENSG00000230747 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000230747 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000230747 Gene

Genomics for ENSG00000230747 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000230747 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J096320 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 600.7 +0.6 605 2.6 HNRNPL PRDM10 NFKBIZ ZNF692 POLR2A RCOR2 ZNF7 BACH1 LARP7 ZIC2 ENSG00000230747 SNRNP200 CIAO1 ITPRIPL1
GH02J096323 Promoter 0.6 Ensembl 600.7 -1.2 -1195 0.2 WT1 SPI1 EZH2 ENSG00000230747 SNRNP200 ITPRIPL1
GH02J096263 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 +56.1 56060 4.1 BRCA1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 TFE3 RFX1 SIX5 CIAO1 TMEM127 piR-32469 SNRNP200 KANSL3 ANKRD36 STARD7-AS1 STARD7 ENSG00000230747 ITPRIPL1
GH02J096255 Promoter/Enhancer 2.1 VISTA FANTOM5 Ensembl ENCODE dbSUPER 10.9 +62.6 62633 7.2 HNRNPL CREB1 GATAD2A CTCF PRDM10 REST ZNF629 TFE3 IKZF1 NFKBIZ CIAO1 SNRNP200 DUSP2 KANSL3 STARD7 STARD7-AS1 ASTL ITPRIPL1 CNNM3 ENSG00000230747
GH02J096535 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.7 -215.8 -215846 4.3 ARHGAP35 SP1 HNRNPL TFE3 SIX5 KDM1A POLR2A BACH1 LARP7 MTA2 ARID5A ITPRIPL1 CNNM4 ENSG00000230747 CIAO1 GPAT2 lnc-ARID5A-1 FER1L5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000230747 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000230747 Gene

Genomic Locations for ENSG00000230747 Gene
chr2:96,307,263-96,321,906
(GRCh38/hg38)
Size:
14,644 bases
Orientation:
Minus strand
chr2:96,973,001-96,987,469
(GRCh37/hg19)
Size:
14,469 bases
Orientation:
Minus strand

Genomic View for ENSG00000230747 Gene

Genes around ENSG00000230747 on UCSC Golden Path with GeneCards custom track
ENSG00000230747 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000230747 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000230747 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000230747 Gene

Proteins for ENSG00000230747 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000230747 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000230747 Gene

Domains & Families for ENSG00000230747 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000230747 Gene

Function for ENSG00000230747 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000230747 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000230747 Gene

Localization for ENSG00000230747 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000230747 Gene

Pathways & Interactions for ENSG00000230747 Gene

PathCards logo

SuperPathways for ENSG00000230747 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000230747 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000230747 Gene

Drugs & Compounds for ENSG00000230747 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000230747 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000230747 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002226F5_9606 lncRNA 740 3

Ensembl: ENST00000421534 (view in UCSC) ,

LNCipedia: lnc-SNRNP200-1:1,

NONCODE: NONHSAT072563.2,

URS00008B3179_9606 lncRNA 1459 2

LNCipedia: lnc-SNRNP200-1:2,

NONCODE: NONHSAT072565.2,

URS0000D5D275_9606 lncRNA 897 2

LncBook: HSALNT0035944,

LNCipedia: lnc-SNRNP200-1:3,

URS00009BB276_9606 lncRNA 740 2

LncBook: HSALNT0035945,

NONCODE: NONHSAT185138.1,

ENSG00000230747 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000230747 Gene

No ASD Table

Relevant External Links for ENSG00000230747 Gene

GeneLoc Exon Structure for
ENSG00000230747

No data available for mRNA/cDNA for ENSG00000230747 Gene

Expression for ENSG00000230747 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000230747 Gene

mRNA expression in normal human tissues for ENSG00000230747 Gene
mRNA expression by GTEx for ENSG00000230747 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000230747 Gene

This gene is overexpressed in Testis (x5.2).
genes like me logo Genes that share expression patterns with ENSG00000230747: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000230747 Gene

Orthologs for ENSG00000230747 Gene

Evolution for ENSG00000230747 Gene

ENSEMBL:
Gene Tree for ENSG00000230747 (if available)
TreeFam:
Gene Tree for ENSG00000230747 (if available)

No data available for Orthologs for ENSG00000230747 Gene

Paralogs for ENSG00000230747 Gene

No data available for Paralogs for ENSG00000230747 Gene

Variants for ENSG00000230747 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000230747 Gene

Disorders for ENSG00000230747 Gene

No disorders were found for ENSG00000230747 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000230747 Gene

Publications for ENSG00000230747 Gene

No publications were found for ENSG00000230747 Gene.

No data available for Mastermind for ENSG00000230747 Gene

Products for ENSG00000230747 Gene

Sources for ENSG00000230747 Gene