ENSG00000230747 Gene (RNA Gene)

 

GC02M096308
GIFtS:
7

Aliases for ENSG00000230747 Gene

Subcategory (RNA class) for ENSG00000230747 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000230747 Gene

  • Novel Transcript 5
  • Lnc-SNRNP200-1 170
  • NONHSAG028611 94
  • HSALNG0017036 169
  • AC021188.1 5

External Ids for ENSG00000230747 Gene

Previous GeneCards Identifiers for ENSG00000230747 Gene

  • GC02M096973

Summaries for ENSG00000230747 Gene

GeneCards Summary for ENSG00000230747 Gene

ENSG00000230747 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000230747 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000230747 Gene

Genomics for ENSG00000230747 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000230747 Gene

Promoters and enhancers for ENSG00000230747 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J096320 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 750.6 +0.4 430 2.6 POLR2A ZNF362 ETV6 L3MBTL2 MAX ZNF121 ZNF148 SP7 ZNF687 CREM SNRNP200 ENSG00000230747 CIAO1 KANSL3 CNNM3 ENSG00000277701 ANKRD36
GH02J096323 Promoter 0.4 Ensembl 750.6 -1.4 -1370 0.2 WT1 ENSG00000230747 SNRNP200 ITPRIPL1
GH02J096263 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 +55.9 55885 4.1 ZBTB40 CTCF SREBF1 SIX5 FOXA1 RBPJ POLR2A NR2F6 ATF1 CREB1 CIAO1 TMEM127 piR-32469 SNRNP200 KANSL3 ANKRD36 CNNM3 STARD7 STARD7-AS1 ENSG00000230747
GH02J096255 Promoter/Enhancer 2.1 VISTA FANTOM5 Ensembl ENCODE dbSUPER 10.9 +62.5 62458 7.2 CTCF LCORL MLX FOXA1 RBPJ SMARCE1 POLR2A USF2 NR2F6 ZNF217 DUSP2 CIAO1 STARD7 STARD7-AS1 ASTL ITPRIPL1 ENSG00000230747 SNRNP200 TMEM127 ARID5A
GH02J096535 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.7 -216.0 -216021 4.3 SP1 SIX5 ZBTB6 RBPJ SMARCE1 POLR2A HDAC2 ATF1 CREB1 HCFC1 ARID5A SNRNP200 KANSL3 ITPRIPL1 CIAO1 CNNM3 ANKRD36 LMAN2L STARD7-AS1 CNNM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000230747 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000230747 Gene

Genomic Locations for ENSG00000230747 Gene
chr2:96,307,263-96,321,731
(GRCh38/hg38)
Size:
14,469 bases
Orientation:
Minus strand
chr2:96,973,001-96,987,469
(GRCh37/hg19)
Size:
14,469 bases
Orientation:
Minus strand

Genomic View for ENSG00000230747 Gene

Genes around ENSG00000230747 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000230747 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000230747 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000230747 Gene

Proteins for ENSG00000230747 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000230747 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000230747 Gene

Domains & Families for ENSG00000230747 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000230747 Gene

Function for ENSG00000230747 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000230747 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000230747 Gene

Localization for ENSG00000230747 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000230747 Gene

Pathways & Interactions for ENSG00000230747 Gene

PathCards logo

SuperPathways for ENSG00000230747 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000230747 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000230747 Gene

Drugs & Compounds for ENSG00000230747 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000230747 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000230747 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(2) LncBook transcripts :
(3) LNCipedia transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000230747 Gene

No ASD Table

Relevant External Links for ENSG00000230747 Gene

GeneLoc Exon Structure for
ENSG00000230747

Expression for ENSG00000230747 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000230747 Gene

mRNA expression in normal human tissues for ENSG00000230747 Gene
mRNA expression by GTEx for ENSG00000230747 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000230747 Gene

This gene is overexpressed in Testis (x5.2).
genes like me logo Genes that share expression patterns with ENSG00000230747: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000230747 Gene

Orthologs for ENSG00000230747 Gene

Evolution for ENSG00000230747 Gene

ENSEMBL:
Gene Tree for ENSG00000230747 (if available)
TreeFam:
Gene Tree for ENSG00000230747 (if available)

No data available for Orthologs for ENSG00000230747 Gene

Paralogs for ENSG00000230747 Gene

No data available for Paralogs for ENSG00000230747 Gene

Variants for ENSG00000230747 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000230747 Gene

Disorders for ENSG00000230747 Gene

No disorders were found for ENSG00000230747 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000230747 Gene

Publications for ENSG00000230747 Gene

No publications were found for ENSG00000230747 Gene.

No data available for External Links for ENSG00000230747 Gene

Products for ENSG00000230747 Gene

Sources for ENSG00000230747 Gene