Aliases for ENSG00000230479 Gene

Subcategory (RNA class) for ENSG00000230479 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ENSG00000230479 Gene

  • Novel Transcript 5
  • NONHSAG032780.2 91
  • HSALNG0132950 164
  • Lnc-CHAF1B-3 165
  • AP000695.1 5

External Ids for ENSG00000230479 Gene

Previous GeneCards Identifiers for ENSG00000230479 Gene

  • GC21P037802
  • GC21P036450
  • GC21P036451
  • GC21P036462
  • GC21P036460
  • GC21P036476
  • GC21P036479
  • GC21P036454

Summaries for ENSG00000230479 Gene

GeneCards Summary for ENSG00000230479 Gene

ENSG00000230479 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000230479 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000230479 Gene

Genomics for ENSG00000230479 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000230479 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J036428 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 607.4 -0.1 -91 3.5 RNF2 ARHGAP35 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 JUND PRDM1 MTA2 ENSG00000230479 LOC105369301 MORC3 ENSG00000233818 RF00017-3702 CHAF1B CLDN14
GH21J036432 Promoter/Enhancer 0.5 Ensembl dbSUPER 600.7 +1.9 1941 0.2 ENSG00000230479 LOC105369301 piR-41838-018 CHAF1B CLDN14
GH21J036449 Enhancer 0.9 Ensembl ENCODE dbSUPER 4.7 +22.2 22240 6 RNF2 JUND ZIC2 PBX2 SCRT2 ESR1 FOS FOSL1 FEZF1 ATF3 ENSG00000233818 ENSG00000230479 lnc-CHAF1B-4 LOC105369301 CHAF1B CLDN14
GH21J036434 Enhancer 0.3 ENCODE dbSUPER 10.1 +4.3 4325 1 ENSG00000230479 LOC105369301 piR-41838-018 CHAF1B CLDN14
GH21J036460 Enhancer 0.6 Ensembl dbSUPER 5.1 +30.0 30041 0.4 OSR2 ZBTB17 KLF1 lnc-CHAF1B-4 ENSG00000233818 ENSG00000230479 ENSG00000279365 LOC105369301 CHAF1B CLDN14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000230479 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000230479 Gene

Genomic Locations for ENSG00000230479 Gene
chr21:36,430,360-36,481,070
(GRCh38/hg38)
Size:
50,711 bases
Orientation:
Plus strand
chr21:37,802,658-37,853,368
(GRCh37/hg19)
Size:
50,711 bases
Orientation:
Plus strand

Genomic View for ENSG00000230479 Gene

Genes around ENSG00000230479 on UCSC Golden Path with GeneCards custom track
ENSG00000230479 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000230479 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000230479 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000230479 Gene

Proteins for ENSG00000230479 Gene

Post-translational modifications for ENSG00000230479 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000230479 Gene

Domains & Families for ENSG00000230479 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000230479 Gene

Function for ENSG00000230479 Gene

Phenotypes From GWAS Catalog for ENSG00000230479 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000230479 Gene

Localization for ENSG00000230479 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000230479 Gene

Pathways & Interactions for ENSG00000230479 Gene

PathCards logo

SuperPathways for ENSG00000230479 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000230479 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000230479 Gene

Drugs & Compounds for ENSG00000230479 Gene

No Compound Related Data Available

Transcripts for ENSG00000230479 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000230479 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001ABDCE_9606 lncRNA 893 3

Ensembl: ENST00000429588 (view in UCSC) ,

LNCipedia: lnc-CHAF1B-3:1,

NONCODE: NONHSAT081973.2,

URS00009C34BB_9606 lncRNA 1168 2

LncBook: HSALNT0273318,

NONCODE: NONHSAT190944.1,

URS00009BC00F_9606 lncRNA 893 2

LncBook: HSALNT0273316,

NONCODE: NONHSAT190943.1,

URS00009B8159_9606 lncRNA 669 2

LncBook: HSALNT0273314,

NONCODE: NONHSAT190942.1,

URS00019CD220_9606 lncRNA 1965 1

ENA: MN297893.1:1..1965:ncRNA,

ENSG00000230479 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000230479 Gene

No ASD Table

Relevant External Links for ENSG00000230479 Gene

GeneLoc Exon Structure for
ENSG00000230479

No data available for mRNA/cDNA for ENSG00000230479 Gene

Expression for ENSG00000230479 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000230479 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000230479 Gene

This gene is overexpressed in Muscle - Skeletal (x10.7) and Liver (x5.8).
genes like me logo Genes that share expression patterns with ENSG00000230479: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000230479 Gene

Orthologs for ENSG00000230479 Gene

Evolution for ENSG00000230479 Gene

ENSEMBL:
Gene Tree for ENSG00000230479 (if available)
TreeFam:
Gene Tree for ENSG00000230479 (if available)

No data available for Orthologs for ENSG00000230479 Gene

Paralogs for ENSG00000230479 Gene

No data available for Paralogs for ENSG00000230479 Gene

Variants for ENSG00000230479 Gene

Variation tolerance for ENSG00000230479 Gene

Gene Damage Index Score: 5.40; 71.17% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000230479 Gene

Disorders for ENSG00000230479 Gene

Additional Disease Information for ENSG00000230479

No disorders were found for ENSG00000230479 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000230479 Gene

Publications for ENSG00000230479 Gene

No publications were found for ENSG00000230479 Gene.

No data available for Mastermind for ENSG00000230479 Gene

Products for ENSG00000230479 Gene

Sources for ENSG00000230479 Gene