Aliases for ENSG00000230393 Gene

Subcategory (RNA class) for ENSG00000230393 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000230393 Gene

  • Novel Transcript 5
  • NONHSAG028704.2 91
  • AC092667.1 5

External Ids for ENSG00000230393 Gene

Previous GeneCards Identifiers for ENSG00000230393 Gene

  • GC02P100721

Summaries for ENSG00000230393 Gene

GeneCards Summary for ENSG00000230393 Gene

ENSG00000230393 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000230393 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000230393 Gene

Genomics for ENSG00000230393 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000230393 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J100104 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 551 4.3 TEAD4 ZNF692 PRDM1 ZIC2 ZSCAN4 EZH2 ZNF600 ZNF341 ZBTB20 ZBTB26 ENSG00000230393 AFF3 lnc-AFF3-1 RF00017-3279 REV1
GH02J100178 Enhancer 0.9 Ensembl ENCODE 11.2 +73.4 73384 0.6 CREB1 CTCF RFX1 JUND FOXA1 PKNOX1 REST NR2C1 ELF4 HDAC1 ENSG00000230393 AFF3 piR-48222-181 RF00017-3279 REV1
GH02J100366 Enhancer 0.9 Ensembl ENCODE 10.9 +260.6 260582 1.4 PRDM10 ZNF140 CEBPB FOS OSR2 JUND ZBTB11 NFIC EP300 WT1 LONRF2 REV1 ENSG00000273306 CHST10 ENSG00000230393 piR-50968-065 CYCSP7
GH02J100135 Enhancer 0.6 Ensembl dbSUPER 12.7 +30.4 30381 0.6 POLR2A RUNX3 BATF ENSG00000230393 AFF3 REV1 lnc-AFF3-1 RF00017-3279
GH02J100008 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 5.7 -92.9 -92877 7 PRDM10 JUND ZIC2 POLR2A PATZ1 EP300 SCRT2 ZBTB44 CTCF ZNF766 ENSG00000230393 AFF3 lnc-LONRF2-3 lnc-NMS-4 RF00017-3279 REV1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000230393 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000230393 Gene

Genomic Locations for ENSG00000230393 Gene
chr2:100,104,919-100,107,504
(GRCh38/hg38)
Size:
2,586 bases
Orientation:
Plus strand
chr2:100,721,381-100,723,966
(GRCh37/hg19)
Size:
2,586 bases
Orientation:
Plus strand

Genomic View for ENSG00000230393 Gene

Genes around ENSG00000230393 on UCSC Golden Path with GeneCards custom track
ENSG00000230393 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000230393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000230393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000230393 Gene

Proteins for ENSG00000230393 Gene

Post-translational modifications for ENSG00000230393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000230393 Gene

Domains & Families for ENSG00000230393 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000230393 Gene

Function for ENSG00000230393 Gene

Phenotypes From GWAS Catalog for ENSG00000230393 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000230393 Gene

Localization for ENSG00000230393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000230393 Gene

Pathways & Interactions for ENSG00000230393 Gene

PathCards logo

SuperPathways for ENSG00000230393 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000230393 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000230393 Gene

Drugs & Compounds for ENSG00000230393 Gene

No Compound Related Data Available

Transcripts for ENSG00000230393 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000230393 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001603C7_9606 lncRNA 2586 2

Ensembl: ENST00000434301 (view in UCSC) ,

NONCODE: NONHSAT072769.2,

ENSG00000230393 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000230393 Gene

No ASD Table

Relevant External Links for ENSG00000230393 Gene

GeneLoc Exon Structure for
ENSG00000230393

No data available for mRNA/cDNA for ENSG00000230393 Gene

Expression for ENSG00000230393 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000230393 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000230393 Gene

This gene is overexpressed in Prostate (x5.1).
genes like me logo Genes that share expression patterns with ENSG00000230393: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000230393 Gene

Orthologs for ENSG00000230393 Gene

Evolution for ENSG00000230393 Gene

ENSEMBL:
Gene Tree for ENSG00000230393 (if available)
TreeFam:
Gene Tree for ENSG00000230393 (if available)

No data available for Orthologs for ENSG00000230393 Gene

Paralogs for ENSG00000230393 Gene

No data available for Paralogs for ENSG00000230393 Gene

Variants for ENSG00000230393 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000230393 Gene

Disorders for ENSG00000230393 Gene

Additional Disease Information for ENSG00000230393

No disorders were found for ENSG00000230393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000230393 Gene

Publications for ENSG00000230393 Gene

No publications were found for ENSG00000230393 Gene.

No data available for Mastermind for ENSG00000230393 Gene

Products for ENSG00000230393 Gene

Sources for ENSG00000230393 Gene