Aliases for ENSG00000229960 Gene

Subcategory (RNA class) for ENSG00000229960 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000229960 Gene

  • Novel Transcript 5
  • NONHSAG004849 92
  • HSALNG0012057 167
  • AL590483.1 5
  • Lnc-AKT3-3 168

External Ids for ENSG00000229960 Gene

Previous GeneCards Identifiers for ENSG00000229960 Gene

  • GC01M244232

Summaries for ENSG00000229960 Gene

GeneCards Summary for ENSG00000229960 Gene

ENSG00000229960 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000229960 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000229960 Gene

Genomics for ENSG00000229960 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000229960 Gene

Promoters and enhancers for ENSG00000229960 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J244091 Enhancer 0.8 Ensembl ENCODE 500.7 +0.4 371 2.1 JUND FOXA2 NR2F2 ZBTB33 GATA3 RAD21 RXRA MAX ZNF521 HNF4A ENSG00000229960 ENSG00000272195 ENSG00000236031 COX20 RPL37P8 EFCAB2 ENSG00000286486
GH01J244089 Enhancer 0.7 Ensembl 0.7 +3.2 3225 0.8 HES1 FOXA2 ZNF316 TCF7L2 PBX2 NFE2 JUND ZNF644 TAL1 HDAC2 ENSG00000229960 ENSG00000286486
GH01J244073 Enhancer 0.8 ENCODE dbSUPER 0.4 +18.0 17984 2.1 RCOR1 MEF2B ZFHX2 POU2F2 EBF1 IKZF1 SCRT1 ZNF768 TBX21 SMARCA4 LOC440742 ENSG00000286486 ENSG00000229960
GH01J244101 Enhancer 0.5 Ensembl CraniofacialAtlas 0.4 -8.0 -7975 1.2 MAZ EZH2 RF00017-546 ENSG00000229960
GH01J244083 Enhancer 0.4 Ensembl 0.4 +9.2 9225 0.8 SPI1 BHLHE40 MYC MAX EZH2 ENSG00000286486 ENSG00000229960 LOC440742
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000229960 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000229960 Gene

Genomic Locations for ENSG00000229960 Gene
chr1:244,068,820-244,093,026
(GRCh38/hg38)
Size:
24,207 bases
Orientation:
Minus strand
chr1:244,232,122-244,256,328
(GRCh37/hg19)
Size:
24,207 bases
Orientation:
Minus strand

Genomic View for ENSG00000229960 Gene

Genes around ENSG00000229960 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000229960 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229960 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000229960 Gene

Proteins for ENSG00000229960 Gene

Post-translational modifications for ENSG00000229960 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229960 Gene

Domains & Families for ENSG00000229960 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000229960 Gene

Function for ENSG00000229960 Gene

Phenotypes From GWAS Catalog for ENSG00000229960 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229960 Gene

Localization for ENSG00000229960 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229960 Gene

Pathways & Interactions for ENSG00000229960 Gene

PathCards logo

SuperPathways for ENSG00000229960 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000229960 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000229960 Gene

Drugs & Compounds for ENSG00000229960 Gene

No Compound Related Data Available

Transcripts for ENSG00000229960 Gene

mRNA/cDNA for ENSG00000229960 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229960 Gene

No ASD Table

Relevant External Links for ENSG00000229960 Gene

GeneLoc Exon Structure for
ENSG00000229960

Expression for ENSG00000229960 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000229960 Gene

genes like me logo Genes that share expression patterns with ENSG00000229960: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229960 Gene

Orthologs for ENSG00000229960 Gene

Evolution for ENSG00000229960 Gene

ENSEMBL:
Gene Tree for ENSG00000229960 (if available)
TreeFam:
Gene Tree for ENSG00000229960 (if available)

No data available for Orthologs for ENSG00000229960 Gene

Paralogs for ENSG00000229960 Gene

No data available for Paralogs for ENSG00000229960 Gene

Variants for ENSG00000229960 Gene

Variation tolerance for ENSG00000229960 Gene

Gene Damage Index Score: 3.23; 52.42% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000229960 Gene

Disorders for ENSG00000229960 Gene

No disorders were found for ENSG00000229960 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000229960 Gene

Publications for ENSG00000229960 Gene

No publications were found for ENSG00000229960 Gene.

No data available for Mastermind for ENSG00000229960 Gene

Products for ENSG00000229960 Gene

Sources for ENSG00000229960 Gene