Aliases for ENSG00000229913 Gene

Data sources for ENSG00000229913 Gene:

RNA type for ENSG00000229913 Gene

lncRNA

Aliases for ENSG00000229913 Gene

External Ids for ENSG00000229913 Gene

Previous GeneCards Identifiers for ENSG00000229913 Gene

  • GC01M057289

Summaries for ENSG00000229913 Gene

GeneCards Summary for ENSG00000229913 Gene

ENSG00000229913 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000229913 include Thyroid Cancer, Nonmedullary, 1.

Additional gene information for ENSG00000229913 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000229913 Gene

Genomics for ENSG00000229913 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000229913 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J056787 Enhancer 0.7 Ensembl ENCODE 10.8 +39.5 39493 1.2 YY1 FOXA2 RXRA HNF4A FOXA1 CTCF ZNF652 SP1 EGR1 GABPA HSALNG0003896 HSALNG0003897 ENSG00000229913 MN298114-004 L13714-011 FYB2 PRKAA2
GH01J056796 Enhancer 0.5 Ensembl 11.6 +30.3 30291 2.4 ZIC2 MAX RFX5 MAFK NFIB KLF1 POLR2A EP300 FYB2 ENSG00000229913 HSALNG0003896 HSALNG0003897 PRKAA2
GH01J056849 Enhancer 0.2 Ensembl 11.3 -21.9 -21909 1.6 ENSG00000229913 C8A FYB2
GH01J056815 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.4 +10.1 10148 4.1 CEBPA ATF3 ZIC2 YY1 MXD4 CEBPB FOXA1 ZNF341 ZFP64 KMT2B FYB2 ENSG00000229913 HSALNG0003896 PRKAA2
GH01J056820 Promoter/Enhancer 1.2 Ensembl ENCODE 0.4 +6.8 6790 0.6 ZNF654 ZNF10 CHD4 YY1 CTCF REST TRIM22 ZFP64 HOMEZ THAP11 ENSG00000229913 FYB2 HSALNG0003896 PRKAA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000229913 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000229913 Gene

Latest Assembly
chr1:56,823,678-56,828,092
(GRCh38/hg38)
Size:
4,415 bases
Orientation:
Minus strand

Previous Assembly
chr1:57,289,352-57,292,593
(GRCh37/hg19 by Ensembl)
Size:
3,242 bases
Orientation:
Minus strand

Genomic View for ENSG00000229913 Gene

Genes around ENSG00000229913 on UCSC Golden Path with GeneCards custom track
ENSG00000229913 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000229913 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229913 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000229913 Gene

Proteins for ENSG00000229913 Gene

Post-translational modifications for ENSG00000229913 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229913 Gene

Domains & Families for ENSG00000229913 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000229913 Gene

Function for ENSG00000229913 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229913 Gene

Localization for ENSG00000229913 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229913 Gene

Pathways & Interactions for ENSG00000229913 Gene

PathCards logo

SuperPathways for ENSG00000229913 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000229913 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000229913 Gene

Drugs & Compounds for ENSG00000229913 Gene

No Compound Related Data Available

Transcripts for ENSG00000229913 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000229913 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000023F17B_9606 lncRNA 1824 3

Ensembl: ENST00000425435 (view in UCSC) ,

LNCipedia: lnc-FYB2-1:2,

NONCODE: NONHSAT003460.2,

URS00009AF6B5_9606 lncRNA 1823 2

LncBook: HSALNT0007314,

NONCODE: NONHSAT151658.1,

URS0001BE8A63_9606 lncRNA 2767 1

LncBook: HSALNT0007315,

URS0001BD1D93_9606 lncRNA 1824 1

LncBook: HSALNT0007314,

URS00008B3811_9606 lncRNA 1815 1

LNCipedia: lnc-FYB2-1:1,

ENSG00000229913 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229913 Gene

No ASD Table

Relevant External Links for ENSG00000229913 Gene

GeneLoc Exon Structure for
ENSG00000229913

No data available for mRNA/cDNA for ENSG00000229913 Gene

Expression for ENSG00000229913 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000229913 Gene

genes like me logo Genes that share expression patterns with ENSG00000229913: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229913 Gene

Orthologs for ENSG00000229913 Gene

Evolution for ENSG00000229913 Gene

ENSEMBL:
Gene Tree for ENSG00000229913 (if available)
TreeFam:
Gene Tree for ENSG00000229913 (if available)

No data available for Orthologs for ENSG00000229913 Gene

Paralogs for ENSG00000229913 Gene

No data available for Paralogs for ENSG00000229913 Gene

Variants for ENSG00000229913 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000229913 Gene

Disorders for ENSG00000229913 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000229913 Gene - From: LNC

Disorder Aliases PubMed IDs
thyroid cancer, nonmedullary, 1
  • nmtc1
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000229913: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000229913 Gene

Publications for ENSG00000229913 Gene

  1. Genome-wide analysis of long noncoding RNA expression profile in papillary thyroid carcinoma. (PMID: 26003293) Lan X … Zhang D (Gene 2015) 72

No data available for Mastermind for ENSG00000229913 Gene

Products for ENSG00000229913 Gene

Sources for ENSG00000229913 Gene