Aliases for ENSG00000229797 Gene

Data sources for ENSG00000229797 Gene:

RNA type for ENSG00000229797 Gene

lncRNA

Aliases for ENSG00000229797 Gene

External Ids for ENSG00000229797 Gene

Previous GeneCards Identifiers for ENSG00000229797 Gene

  • GC02M131501
  • GC02M130743

Summaries for ENSG00000229797 Gene

GeneCards Summary for ENSG00000229797 Gene

ENSG00000229797 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000229797 Gene

Additional gene information for ENSG00000229797 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000229797 Gene

Genomics for ENSG00000229797 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000229797 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J130755 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 250.7 0.0 -36 1.2 ZIC2 REST ZNF341 SIN3A SAP130 GABPB1 EHMT2 SMARCE1 MIER2 GLIS1 AMER3 ENSG00000229797 lnc-CFC1-5 piR-56497-081 HSALNG0018843 ARHGEF4
GH02J130756 Promoter 0.3 EPDnew 250.7 +0.7 703 0.1 AMER3 ENSG00000229797 lnc-CFC1-5 ARHGEF4
GH02J130807 Enhancer 0.9 ENCODE dbSUPER 12 -52.2 -52245 2.5 CEBPB MAX EP300 ELF1 CTBP1 RAD21 STAT3 TBP TCF7L2 USF2 AMER3 ENSG00000229797 HSALNG0018844 HSALNG0018848 lnc-ARHGEF4-3 ARHGEF4
GH02J130726 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.3 +28.4 28430 2.5 SP1 ZNF600 MYC POLR2A ZIC2 REST SMAD5 TBP ZNF341 ZNF217 GPR148 RF00994-515 ENSG00000229797 POTEJ
GH02J130744 Enhancer 0.8 Ensembl 0.4 +11.3 11340 0.8 SSRP1 CEBPA KMT2B FOXA2 SMAD4 SAP130 MIER3 RARA GABPB1 CREM MK280144-373 AMER3 piR-58898 ENSG00000229797 GPR148
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000229797 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000229797 Gene

Latest Assembly
chr2:130,719,924-130,756,141
(GRCh38/hg38)
Size:
36,218 bases
Orientation:
Minus strand

Previous Assembly
chr2:131,501,111-131,513,452
(GRCh37/hg19 by Ensembl)
Size:
12,342 bases
Orientation:
Minus strand

Genomic View for ENSG00000229797 Gene

Genes around ENSG00000229797 on UCSC Golden Path with GeneCards custom track
ENSG00000229797 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000229797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000229797 Gene

Proteins for ENSG00000229797 Gene

Post-translational modifications for ENSG00000229797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229797 Gene

Domains & Families for ENSG00000229797 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000229797 Gene

Function for ENSG00000229797 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229797 Gene

Localization for ENSG00000229797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229797 Gene

Pathways & Interactions for ENSG00000229797 Gene

PathCards logo

SuperPathways for ENSG00000229797 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000229797 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000229797 Gene

Drugs & Compounds for ENSG00000229797 Gene

No Compound Related Data Available

Transcripts for ENSG00000229797 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000229797 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000107A4_9606 lncRNA 708 3

Ensembl: ENST00000448777 (view in UCSC) ,

LNCipedia: lnc-CFC1-2:1,

NONCODE: NONHSAT074376.2,

URS00000DFA0C_9606 lncRNA 525 3

Ensembl: ENST00000436488 (view in UCSC) ,

LNCipedia: lnc-CFC1-2:2,

NONCODE: NONHSAT074377.2,

URS0000EF05A0_9606 lncRNA 1173 1

Ensembl: ENST00000662920 (view in UCSC) ,

URS00008BCD82_9606 lncRNA 7553 2

LNCipedia: lnc-CFC1-2:7,

NONCODE: NONHSAT074373.2,

URS00009B227B_9606 lncRNA 1078 2

LncBook: HSALNT0039840,

NONCODE: NONHSAT185546.1,

ENSG00000229797 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229797 Gene

No ASD Table

Relevant External Links for ENSG00000229797 Gene

GeneLoc Exon Structure for
ENSG00000229797

No data available for mRNA/cDNA for ENSG00000229797 Gene

Expression for ENSG00000229797 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000229797 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000229797 Gene

This gene is overexpressed in Brain - Cerebellum (x9.2), Brain - Cerebellar Hemisphere (x9.1), Pituitary (x8.8), Brain - Cortex (x4.7), and Brain - Frontal Cortex (BA9) (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000229797: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229797 Gene

Orthologs for ENSG00000229797 Gene

Evolution for ENSG00000229797 Gene

ENSEMBL:
Gene Tree for ENSG00000229797 (if available)
TreeFam:
Gene Tree for ENSG00000229797 (if available)

No data available for Orthologs for ENSG00000229797 Gene

Paralogs for ENSG00000229797 Gene

No data available for Paralogs for ENSG00000229797 Gene

Variants for ENSG00000229797 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000229797 Gene

Disorders for ENSG00000229797 Gene

Additional Disease Information for ENSG00000229797

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000229797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000229797 Gene

Publications for ENSG00000229797 Gene

No publications were found for ENSG00000229797 Gene.

No data available for Mastermind for ENSG00000229797 Gene

Products for ENSG00000229797 Gene

Sources for ENSG00000229797 Gene