Aliases for ENSG00000229770 Gene

Subcategory (RNA class) for ENSG00000229770 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000229770 Gene

  • Novel Transcript 5
  • NONHSAG033574 94
  • HSALNG0134621 169
  • AL022337.1 5
  • Lnc-HPS4-2 170

External Ids for ENSG00000229770 Gene

Previous GeneCards Identifiers for ENSG00000229770 Gene

  • GC22M026557

Summaries for ENSG00000229770 Gene

GeneCards Summary for ENSG00000229770 Gene

ENSG00000229770 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000229770 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000229770 Gene

Genomics for ENSG00000229770 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000229770 Gene

Promoters and enhancers for ENSG00000229770 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J026169 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 750.6 -0.4 -360 1 ZIC2 ZNF37A EZH2 POLR2A ZNF398 ENSG00000229770 LOC105372971 SEZ6L lnc-HPS4-6
GH22J026168 Promoter/Enhancer 0.7 Ensembl ENCODE 750.6 +0.5 540 0.4 SP1 ZSCAN5C ENSG00000229770 LOC105372971 SEZ6L LOC102724801
GH22J026196 Enhancer 0.7 ENCODE 11.5 -27.5 -27509 0.2 TFE3 CEBPG KAT8 ZNF644 CEBPA GATAD2A RXRB PKNOX1 FOXK2 SOX13 SEZ6L ENSG00000229770 LINC02559 lnc-HPS4-6
GH22J026094 Enhancer 0.2 Ensembl 11.5 +73.8 73840 1.4 HSALNG0134618 LINC02559 ENSG00000229770 ENSG00000232464 SEZ6L ENSG00000231933 MYO18B lnc-HPS4-7
GH22J026125 Enhancer 0.2 ENCODE 11.2 +44.2 44151 0.2 SEZ6L LINC02559 ENSG00000229770 piR-48209-477 HSALNG0134618 LOC102724801
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000229770 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000229770 Gene

Genomic Locations for ENSG00000229770 Gene
chr22:26,161,905-26,169,341
(GRCh38/hg38)
Size:
7,437 bases
Orientation:
Minus strand
chr22:26,557,876-26,559,180
(GRCh37/hg19)
Size:
1,305 bases
Orientation:
Minus strand

Genomic View for ENSG00000229770 Gene

Genes around ENSG00000229770 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000229770 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229770 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000229770 Gene

Proteins for ENSG00000229770 Gene

Post-translational modifications for ENSG00000229770 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229770 Gene

Domains & Families for ENSG00000229770 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000229770 Gene

Function for ENSG00000229770 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229770 Gene

Localization for ENSG00000229770 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229770 Gene

Pathways & Interactions for ENSG00000229770 Gene

PathCards logo

SuperPathways for ENSG00000229770 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000229770 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000229770 Gene

Drugs & Compounds for ENSG00000229770 Gene

No Compound Related Data Available

Transcripts for ENSG00000229770 Gene

mRNA/cDNA for ENSG00000229770 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229770 Gene

No ASD Table

Relevant External Links for ENSG00000229770 Gene

GeneLoc Exon Structure for
ENSG00000229770

Expression for ENSG00000229770 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000229770 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000229770 Gene

This gene is overexpressed in Brain - Hypothalamus (x6.4), Brain - Cerebellar Hemisphere (x6.3), Brain - Cerebellum (x6.0), Brain - Hippocampus (x5.7), and Brain - Cortex (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000229770: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229770 Gene

Orthologs for ENSG00000229770 Gene

Evolution for ENSG00000229770 Gene

ENSEMBL:
Gene Tree for ENSG00000229770 (if available)
TreeFam:
Gene Tree for ENSG00000229770 (if available)

No data available for Orthologs for ENSG00000229770 Gene

Paralogs for ENSG00000229770 Gene

No data available for Paralogs for ENSG00000229770 Gene

Variants for ENSG00000229770 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000229770 Gene

Disorders for ENSG00000229770 Gene

No disorders were found for ENSG00000229770 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000229770 Gene

Publications for ENSG00000229770 Gene

No publications were found for ENSG00000229770 Gene.

No data available for External Links for ENSG00000229770 Gene

Products for ENSG00000229770 Gene

Sources for ENSG00000229770 Gene