Aliases for ENSG00000229711 Gene

Subcategory (RNA class) for ENSG00000229711 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000229711 Gene

  • Novel Transcript 5
  • NONHSAG005910.2 91
  • HSALNG0077976 164
  • Lnc-SGMS1-1 165
  • AL512366.1 5

External Ids for ENSG00000229711 Gene

Previous GeneCards Identifiers for ENSG00000229711 Gene

  • GC10M052582

Summaries for ENSG00000229711 Gene

GeneCards Summary for ENSG00000229711 Gene

ENSG00000229711 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000229711 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000229711 Gene

Genomics for ENSG00000229711 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000229711 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J050807 Enhancer 0.8 Ensembl 0.4 +16.1 16135 0.8 GATAD2A RFX5 FOXA1 SP1 CEBPA FOXK2 SOX13 RFX3 FOXA2 MAFF ASAH2B A1CF lnc-SGMS1-5 ENSG00000229711
GH10J050850 Enhancer 0.6 ENCODE 0.3 -25.6 -25590 0.2 JUND PRDM1 FOS FOSL1 FOSL2 CEBPB CEBPG ATF3 JUN ARID1B ASAH2B ENSG00000229711 piR-43939-005 A1CF
GH10J050857 Enhancer 0.5 Ensembl 0.3 -33.2 -33175 1 PRDM10 SP1 TCF7L2 YY1 HNF4A RXRA MAX EGR1 A1CF piR-43939-005 ENSG00000229711 ASAH2B
GH10J050853 Enhancer 0.5 FANTOM5 0.3 -29.4 -29399 0.3 ZNF316 MAFF MAFK HNF4A RXRA A1CF piR-43939-005 ENSG00000229711 ASAH2B
GH10J050805 Enhancer 0.3 Ensembl 0.4 +18.5 18525 1.2 ZNF217 RBM22 lnc-SGMS1-5 ASAH2B ASAH2 ENSG00000229711 A1CF
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000229711 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000229711 Gene

Genomic Locations for ENSG00000229711 Gene
chr10:50,822,692-50,824,526
(GRCh38/hg38)
Size:
1,835 bases
Orientation:
Minus strand
chr10:52,582,452-52,584,285
(GRCh37/hg19)
Size:
1,834 bases
Orientation:
Minus strand

Genomic View for ENSG00000229711 Gene

Genes around ENSG00000229711 on UCSC Golden Path with GeneCards custom track
ENSG00000229711 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000229711 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229711 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000229711 Gene

Proteins for ENSG00000229711 Gene

Post-translational modifications for ENSG00000229711 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229711 Gene

Domains & Families for ENSG00000229711 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000229711 Gene

Function for ENSG00000229711 Gene

Phenotypes From GWAS Catalog for ENSG00000229711 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229711 Gene

Localization for ENSG00000229711 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229711 Gene

Pathways & Interactions for ENSG00000229711 Gene

PathCards logo

SuperPathways for ENSG00000229711 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000229711 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000229711 Gene

Drugs & Compounds for ENSG00000229711 Gene

No Compound Related Data Available

Transcripts for ENSG00000229711 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000229711 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000059DFB1_9606 lncRNA 636 4

Ensembl: ENST00000438919 (view in UCSC) ,

LncBook: HSALNT0162679,

LNCipedia: lnc-SGMS1-1:1,

NONCODE: NONHSAT013401.2,

URS00009BF472_9606 lncRNA 636 2

LncBook: HSALNT0162680,

NONCODE: NONHSAT157007.1,

ENSG00000229711 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229711 Gene

No ASD Table

Relevant External Links for ENSG00000229711 Gene

GeneLoc Exon Structure for
ENSG00000229711

No data available for mRNA/cDNA for ENSG00000229711 Gene

Expression for ENSG00000229711 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000229711 Gene

genes like me logo Genes that share expression patterns with ENSG00000229711: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229711 Gene

Orthologs for ENSG00000229711 Gene

Evolution for ENSG00000229711 Gene

ENSEMBL:
Gene Tree for ENSG00000229711 (if available)
TreeFam:
Gene Tree for ENSG00000229711 (if available)

No data available for Orthologs for ENSG00000229711 Gene

Paralogs for ENSG00000229711 Gene

No data available for Paralogs for ENSG00000229711 Gene

Variants for ENSG00000229711 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000229711 Gene

Disorders for ENSG00000229711 Gene

No disorders were found for ENSG00000229711 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000229711 Gene

Publications for ENSG00000229711 Gene

No publications were found for ENSG00000229711 Gene.

No data available for Mastermind for ENSG00000229711 Gene

Products for ENSG00000229711 Gene

Sources for ENSG00000229711 Gene