Aliases for ENSG00000229618 Gene

Subcategory (RNA class) for ENSG00000229618 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ENSG00000229618 Gene

  • Novel Transcript 5
  • NONHSAG046974.2 91
  • NONHSAG046971.2 91
  • HSALNG0056243 164
  • Lnc-ARL4A-54 165
  • AC011287.1 5

External Ids for ENSG00000229618 Gene

Previous GeneCards Identifiers for ENSG00000229618 Gene

  • GC07P013141
  • GC07P013101

Summaries for ENSG00000229618 Gene

GeneCards Summary for ENSG00000229618 Gene

ENSG00000229618 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000229618 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000229618 Gene

Genomics for ENSG00000229618 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000229618 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J012723 Enhancer 0.7 Ensembl dbSUPER 600.7 -1.8 -1751 0.4 ZNF512 RELA BCOR ZNF384 ZFP91 ZBTB33 CAVIN1 ENSG00000229618 ENSG00000199470 RF00017-6055 ARL4A
GH07J013041 Enhancer 0.8 Ensembl ENCODE 11.9 +316.6 316647 2 SP1 NR3C1 FOXA2 TEAD1 FOXP1 FOSL2 FOXA1 HOMEZ FOS ZBTB33 ENSG00000229618 piR-60140-021 piR-38661-002 LOC105375158 ARL4A ETV1
GH07J013057 Enhancer 0.6 ENCODE 12.1 +331.5 331507 1.2 ARHGAP35 ZNF512 LEF1 PKNOX1 ZNF184 NKRF TRIM25 BCOR IRF2 SPI1 ENSG00000229618 piR-60140-021 lnc-ARL4A-7 LOC105375158 ARL4A ETV1
GH07J013026 Enhancer 0.4 Ensembl ENCODE 14.1 +301.8 301804 2.5 FOXA2 ENSG00000229618 piR-38661-002 piR-60140-021 LOC105375158 ARL4A ETV1
GH07J013181 Enhancer 0.4 Ensembl 14.7 +455.3 455349 0.6 PRDM10 ZBTB17 SMARCA4 ENSG00000229618 piR-36588-396 piR-40110-615 lnc-ARL4A-7 ARL4A ETV1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000229618 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000229618 Gene

Genomic Locations for ENSG00000229618 Gene
chr7:12,726,152-13,751,920
(GRCh38/hg38)
Size:
1,025,769 bases
Orientation:
Plus strand
chr7:13,141,016-13,743,774
(GRCh37/hg19)
Size:
602,759 bases
Orientation:
Plus strand

Genomic View for ENSG00000229618 Gene

Genes around ENSG00000229618 on UCSC Golden Path with GeneCards custom track
ENSG00000229618 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000229618 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229618 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000229618 Gene

Proteins for ENSG00000229618 Gene

Post-translational modifications for ENSG00000229618 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229618 Gene

Domains & Families for ENSG00000229618 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000229618 Gene

Function for ENSG00000229618 Gene

Phenotypes From GWAS Catalog for ENSG00000229618 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229618 Gene

Localization for ENSG00000229618 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229618 Gene

Pathways & Interactions for ENSG00000229618 Gene

PathCards logo

SuperPathways for ENSG00000229618 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000229618 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000229618 Gene

Drugs & Compounds for ENSG00000229618 Gene

No Compound Related Data Available

Transcripts for ENSG00000229618 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000229618 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003E8002_9606 lncRNA 575 4

Ensembl: ENST00000443947 (view in UCSC) ,

LncBook: HSALNT0118967,

LNCipedia: lnc-ARL4A-54:3,

NONCODE: NONHSAT119249.2,

URS0000379EDF_9606 lncRNA 526 4

Ensembl: ENST00000411542 (view in UCSC) ,

LncBook: HSALNT0118971,

LNCipedia: lnc-ARL4A-54:5,

NONCODE: NONHSAT119250.2,

URS0000A7DDE4_9606 lncRNA 2642 3

Ensembl: ENST00000638774 (view in UCSC) ,

LncBook: HSALNT0119005,

LNCipedia: lnc-ARL4A-54:6,

URS0000A91C2F_9606 lncRNA 1350 3

Ensembl: ENST00000638964 (view in UCSC) ,

LncBook: HSALNT0118921,

LNCipedia: lnc-ARL4A-54:2,

URS0000A7C274_9606 lncRNA 1213 3

Ensembl: ENST00000640300 (view in UCSC) ,

LncBook: HSALNT0118969,

LNCipedia: lnc-ARL4A-54:4,

ENSG00000229618 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229618 Gene

No ASD Table

Relevant External Links for ENSG00000229618 Gene

GeneLoc Exon Structure for
ENSG00000229618

No data available for mRNA/cDNA for ENSG00000229618 Gene

Expression for ENSG00000229618 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000229618 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000229618 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x14.0), Brain - Cortex (x12.8), and Brain - Anterior cingulate cortex (BA24) (x11.6).
genes like me logo Genes that share expression patterns with ENSG00000229618: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229618 Gene

Orthologs for ENSG00000229618 Gene

Evolution for ENSG00000229618 Gene

ENSEMBL:
Gene Tree for ENSG00000229618 (if available)
TreeFam:
Gene Tree for ENSG00000229618 (if available)

No data available for Orthologs for ENSG00000229618 Gene

Paralogs for ENSG00000229618 Gene

No data available for Paralogs for ENSG00000229618 Gene

Variants for ENSG00000229618 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000229618 Gene

Disorders for ENSG00000229618 Gene

No disorders were found for ENSG00000229618 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000229618 Gene

Publications for ENSG00000229618 Gene

No publications were found for ENSG00000229618 Gene.

No data available for Mastermind for ENSG00000229618 Gene

Products for ENSG00000229618 Gene

Sources for ENSG00000229618 Gene