Aliases for ENSG00000229607 Gene

Subcategory (RNA class) for ENSG00000229607 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000229607 Gene

  • Novel Transcript 5
  • HSALNG0002197 167
  • NONHSAG000881 92
  • Lnc-LAPTM5-1 168
  • AL137027.1 5

External Ids for ENSG00000229607 Gene

Previous GeneCards Identifiers for ENSG00000229607 Gene

  • GC01M031283

Summaries for ENSG00000229607 Gene

GeneCards Summary for ENSG00000229607 Gene

ENSG00000229607 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000229607 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000229607 Gene

Genomics for ENSG00000229607 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000229607 Gene

Promoters and enhancers for ENSG00000229607 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J030815 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 500.7 -1.5 -1506 2.3 EP300 FOS ZIC2 RFX1 ZNF341 MYNN CREB1 SMC3 BMI1 YY1 ENSG00000229607 SDC3 LOC400748 MATN1 MATN1-AS1 piR-34822-006
GH01J030808 Enhancer 1.1 ENCODE dbSUPER 0.4 +5.9 5905 3.2 NRF1 GTF2E2 JUND TEAD4 FOS ZNF10 ZIC2 REST ZBTB11 MYC SDC3 LOC400748 MATN1 MATN1-AS1 FJ601684-015 ENSG00000229607 LOC105378621
GH01J030821 Enhancer 0.8 ENCODE dbSUPER 0.4 -6.6 -6599 0.8 FOXA2 SPI1 JUND RXRA KDM1A ZBTB33 HNF4A REST CEBPG CEBPB LINC01778 piR-34822-006 LOC400748 MATN1 MATN1-AS1 SDC3 ENSG00000229607
GH01J030818 Enhancer 0.4 ENCODE 0.7 -3.2 -3156 0.2 TEAD4 PRDM10 CEBPB DPF2 SDC3 LOC400748 MATN1 MATN1-AS1 ENSG00000229607 piR-34822-006
GH01J030820 Enhancer 0.3 CraniofacialAtlas 0.7 -4.7 -4701 0.2 SPI1 EZH2 SDC3 LOC400748 MATN1 MATN1-AS1 ENSG00000229607 piR-34822-006
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000229607 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000229607 Gene

Genomic Locations for ENSG00000229607 Gene
chr1:30,810,378-30,815,553
(GRCh38/hg38)
Size:
5,176 bases
Orientation:
Minus strand
chr1:31,283,225-31,288,400
(GRCh37/hg19)
Size:
5,176 bases
Orientation:
Minus strand

Genomic View for ENSG00000229607 Gene

Genes around ENSG00000229607 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000229607 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229607 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000229607 Gene

Proteins for ENSG00000229607 Gene

Post-translational modifications for ENSG00000229607 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229607 Gene

Domains & Families for ENSG00000229607 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000229607 Gene

Function for ENSG00000229607 Gene

Phenotypes From GWAS Catalog for ENSG00000229607 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229607 Gene

Localization for ENSG00000229607 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229607 Gene

Pathways & Interactions for ENSG00000229607 Gene

PathCards logo

SuperPathways for ENSG00000229607 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000229607 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000229607 Gene

Drugs & Compounds for ENSG00000229607 Gene

No Compound Related Data Available

Transcripts for ENSG00000229607 Gene

mRNA/cDNA for ENSG00000229607 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229607 Gene

No ASD Table

Relevant External Links for ENSG00000229607 Gene

GeneLoc Exon Structure for
ENSG00000229607

Expression for ENSG00000229607 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000229607 Gene

genes like me logo Genes that share expression patterns with ENSG00000229607: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229607 Gene

Orthologs for ENSG00000229607 Gene

Evolution for ENSG00000229607 Gene

ENSEMBL:
Gene Tree for ENSG00000229607 (if available)
TreeFam:
Gene Tree for ENSG00000229607 (if available)

No data available for Orthologs for ENSG00000229607 Gene

Paralogs for ENSG00000229607 Gene

No data available for Paralogs for ENSG00000229607 Gene

Variants for ENSG00000229607 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000229607 Gene

Disorders for ENSG00000229607 Gene

No disorders were found for ENSG00000229607 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000229607 Gene

Publications for ENSG00000229607 Gene

No publications were found for ENSG00000229607 Gene.

No data available for Mastermind for ENSG00000229607 Gene

Products for ENSG00000229607 Gene

Sources for ENSG00000229607 Gene