Aliases for ENSG00000229116 Gene

Subcategory (RNA class) for ENSG00000229116 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000229116 Gene

  • Novel Transcript 5
  • HSALNG0077609 169
  • NONHSAG005742 94
  • Lnc-CXCL12-1 170
  • AL137026.1 5

External Ids for ENSG00000229116 Gene

Previous GeneCards Identifiers for ENSG00000229116 Gene

  • GC10M044787

Summaries for ENSG00000229116 Gene

GeneCards Summary for ENSG00000229116 Gene

ENSG00000229116 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000229116 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000229116 Gene

Genomics for ENSG00000229116 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000229116 Gene

Promoters and enhancers for ENSG00000229116 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J044292 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.1 -79 3 HLF MCM2 IKZF1 IKZF2 ZNF239 ZNF311 MNT HDGF ZIK1 MLLT1 ENSG00000229116 C10orf142 ZNF32-AS2 CXCL12 CEP164P1 ENSG00000287901
GH10J044293 Enhancer 0.2 CraniofacialAtlas 750.6 +1.6 1645 0.4 ENSG00000229116 C10orf142 lnc-CXCL12-6
GH10J044324 Enhancer 0.9 Ensembl ENCODE 11.6 -31.9 -31895 2.6 LCORL MLX CREB1 MNT NFIB BCL6B ELF3 SP5 ZNF644 FOSL2 ZNF32-AS2 ZNF32 ZNF32-AS1 ENSG00000229116 CXCL12 TMEM72-AS1 ENSG00000287901 HSALNG0077610
GH10J043845 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.3 +447.3 447297 1.4 RAD21 EED NR2F2 CXCL12 ENSG00000229116 LINC02659 piR-33056-002 LINC00841 LINC00619 LINC00840
GH10J044334 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 11.1 -40.8 -40789 2.1 PRDM1 ZIC2 PATZ1 ZNF501 ZBTB17 FOS ZNF423 GLIS1 CXCL12 ENSG00000229116 HSALNG0077610 ENSG00000287901
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000229116 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000229116 Gene

Genomic Locations for ENSG00000229116 Gene
chr10:44,282,489-44,293,998
(GRCh38/hg38)
Size:
11,510 bases
Orientation:
Minus strand
chr10:44,787,706-44,789,157
(GRCh37/hg19)
Size:
1,452 bases
Orientation:
Minus strand

Genomic View for ENSG00000229116 Gene

Genes around ENSG00000229116 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000229116 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000229116 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000229116 Gene

Proteins for ENSG00000229116 Gene

Post-translational modifications for ENSG00000229116 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000229116 Gene

Domains & Families for ENSG00000229116 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000229116 Gene

Function for ENSG00000229116 Gene

Phenotypes From GWAS Catalog for ENSG00000229116 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000229116 Gene

Localization for ENSG00000229116 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000229116 Gene

Pathways & Interactions for ENSG00000229116 Gene

PathCards logo

SuperPathways for ENSG00000229116 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000229116 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000229116 Gene

Drugs & Compounds for ENSG00000229116 Gene

No Compound Related Data Available

Transcripts for ENSG00000229116 Gene

mRNA/cDNA for ENSG00000229116 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(4) LncBook transcripts :
(4) NONCODE transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000229116 Gene

No ASD Table

Relevant External Links for ENSG00000229116 Gene

GeneLoc Exon Structure for
ENSG00000229116

Expression for ENSG00000229116 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000229116 Gene

mRNA expression in normal human tissues for ENSG00000229116 Gene
genes like me logo Genes that share expression patterns with ENSG00000229116: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000229116 Gene

Orthologs for ENSG00000229116 Gene

Evolution for ENSG00000229116 Gene

ENSEMBL:
Gene Tree for ENSG00000229116 (if available)
TreeFam:
Gene Tree for ENSG00000229116 (if available)

No data available for Orthologs for ENSG00000229116 Gene

Paralogs for ENSG00000229116 Gene

No data available for Paralogs for ENSG00000229116 Gene

Variants for ENSG00000229116 Gene

Variation tolerance for ENSG00000229116 Gene

Gene Damage Index Score: 4.39; 63.61% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000229116 Gene

Disorders for ENSG00000229116 Gene

No disorders were found for ENSG00000229116 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000229116 Gene

Publications for ENSG00000229116 Gene

No publications were found for ENSG00000229116 Gene.

No data available for External Links for ENSG00000229116 Gene

Products for ENSG00000229116 Gene

Sources for ENSG00000229116 Gene