Aliases for ENSG00000228873 Gene

Subcategory (RNA class) for ENSG00000228873 Gene

lncRNA

Aliases for ENSG00000228873 Gene

  • Novel Transcript 5
  • AC012307.1 5

External Ids for ENSG00000228873 Gene

Previous GeneCards Identifiers for ENSG00000228873 Gene

  • GC02M096811

Summaries for ENSG00000228873 Gene

GeneCards Summary for ENSG00000228873 Gene

ENSG00000228873 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228873 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228873 Gene

Genomics for ENSG00000228873 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228873 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J096142 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.8 753 8.2 SP1 CREB1 CTCF ZBTB33 ZNF629 POLR2A BACH1 JUND LARP7 STAT3 DUSP2 ENSG00000228873 piR-58949 GPAT2 ARID5A SNRNP200 CIAO1 TMEM127 KANSL3 GPAT2P1
GH02J096155 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.0 -11028 4.2 SP1 LEF1 POLR2A BACH1 LARP7 STAT3 ZNF143 MTA2 RELA ZIC2 ADRA2B GPAT2 GPAT2P1 ARID5A DUSP2 KANSL3 TMEM127 ASTL lnc-CIAO1-3 ENSG00000228873
GH02J096161 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -16.4 -16428 4.1 SP1 POLR2A BACH1 FOS ZNF143 SMAD5 TCF12 IKZF2 RELA TRIM22 lnc-CIAO1-3 ASTL ADRA2B ITPRIPL1 STARD7-AS1 STARD7 ENSG00000230747 KCNIP3 DUSP2 ARID5A
GH02J096152 Enhancer 0.4 ENCODE dbSUPER 0.4 -5.6 -5627 0.5 ZIC2 DUSP2 ENSG00000228873 lnc-CIAO1-3 STARD7
GH02J096153 Enhancer 0.4 dbSUPER 0.4 -7.3 -7346 1.2 CTCF RAD21 GLIS2 GPAT2 ASTL DUSP2 ENSG00000228873 lnc-CIAO1-3 STARD7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228873 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228873 Gene

Genomic Locations for ENSG00000228873 Gene
chr2:96,145,602-96,147,012
(GRCh38/hg38)
Size:
1,411 bases
Orientation:
Minus strand
chr2:96,811,341-96,812,751
(GRCh37/hg19)
Size:
1,411 bases
Orientation:
Minus strand

Genomic View for ENSG00000228873 Gene

Genes around ENSG00000228873 on UCSC Golden Path with GeneCards custom track
ENSG00000228873 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228873 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228873 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228873 Gene

Proteins for ENSG00000228873 Gene

Post-translational modifications for ENSG00000228873 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228873 Gene

Domains & Families for ENSG00000228873 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228873 Gene

Function for ENSG00000228873 Gene

Phenotypes From GWAS Catalog for ENSG00000228873 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228873 Gene

Localization for ENSG00000228873 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228873 Gene

Pathways & Interactions for ENSG00000228873 Gene

PathCards logo

SuperPathways for ENSG00000228873 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228873 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228873 Gene

Drugs & Compounds for ENSG00000228873 Gene

No Compound Related Data Available

Transcripts for ENSG00000228873 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228873 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000007862A_9606 lncRNA 197 1

Ensembl: ENST00000449242 (view in UCSC) ,

ENSG00000228873 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228873 Gene

No ASD Table

Relevant External Links for ENSG00000228873 Gene

GeneLoc Exon Structure for
ENSG00000228873

No data available for mRNA/cDNA for ENSG00000228873 Gene

Expression for ENSG00000228873 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228873 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228873 Gene

This gene is overexpressed in Bladder (x32.7) and Prostate (x7.5).
genes like me logo Genes that share expression patterns with ENSG00000228873: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228873 Gene

Orthologs for ENSG00000228873 Gene

Evolution for ENSG00000228873 Gene

ENSEMBL:
Gene Tree for ENSG00000228873 (if available)
TreeFam:
Gene Tree for ENSG00000228873 (if available)

No data available for Orthologs for ENSG00000228873 Gene

Paralogs for ENSG00000228873 Gene

No data available for Paralogs for ENSG00000228873 Gene

Variants for ENSG00000228873 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228873 Gene

Disorders for ENSG00000228873 Gene

No disorders were found for ENSG00000228873 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228873 Gene

Publications for ENSG00000228873 Gene

No publications were found for ENSG00000228873 Gene.

No data available for Mastermind for ENSG00000228873 Gene

Products for ENSG00000228873 Gene

Sources for ENSG00000228873 Gene