Aliases for ENSG00000228838 Gene

Data sources for ENSG00000228838 Gene:

RNA type for ENSG00000228838 Gene

lncRNA

Aliases for ENSG00000228838 Gene

External Ids for ENSG00000228838 Gene

Previous GeneCards Identifiers for ENSG00000228838 Gene

  • GC01P053753

Summaries for ENSG00000228838 Gene

GeneCards Summary for ENSG00000228838 Gene

ENSG00000228838 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228838 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228838 Gene

Genomics for ENSG00000228838 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228838 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J053286 Enhancer 0.7 Ensembl CraniofacialAtlas 250.7 +0.3 342 3.6 ZIC2 KLF9 BHLHE40 RFX1 GLIS1 PKNOX1 ZNF687 RAD21 POLR2A BMI1 ENSG00000228838 LOC105378726 LRP8 CZIB MAGOH
GH01J053394 Enhancer 0.9 Ensembl ENCODE 12.8 +106.2 106235 1 ZNF207 ZNF654 IKZF1 CTCF REST TRIM22 RAD21 SMC3 ZNF433 YY1 LRP8 ENSG00000228838 ENSG00000234578 LINC01771 ZYG11A HSALNG0003700 lnc-LRP8-5 DMRTB1
GH01J053390 Enhancer 0.8 FANTOM5 Ensembl 12.8 +102.7 102743 2 MYC EBF1 ETV1 IKZF1 ATF4 ATF3 SPI1 IKZF2 TRIM24 CTBP1 LRP8 ENSG00000228838 ENSG00000234578 LINC01771 ENSG00000232762 lnc-LRP8-5 HSALNG0003700 DMRTB1
GH01J053312 Enhancer 0.4 Ensembl 12.2 +24.5 24543 0.8 ZMYM3 BCOR SMARCA5 ENSG00000228838 ENSG00000234578 ENSG00000235563 lnc-MAGOH-4 HSALNG0003693 LRP8 LOC105378726 MAGOH
GH01J053396 Enhancer 0.3 Ensembl 12.8 +109.0 109043 1.4 MCM2 HSALNG0003700 ORC1 LRP8 ENSG00000228838 ENSG00000234578 LINC01771 lnc-LRP8-5 DMRTB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228838 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228838 Gene

Latest Assembly
chr1:53,287,458-53,292,239
(GRCh38/hg38)
Size:
4,782 bases
Orientation:
Plus strand

Previous Assembly
chr1:53,753,696-53,755,378
(GRCh37/hg19 by Ensembl)
Size:
1,683 bases
Orientation:
Plus strand

Genomic View for ENSG00000228838 Gene

Genes around ENSG00000228838 on UCSC Golden Path with GeneCards custom track
ENSG00000228838 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228838 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228838 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228838 Gene

Proteins for ENSG00000228838 Gene

Post-translational modifications for ENSG00000228838 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228838 Gene

Domains & Families for ENSG00000228838 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228838 Gene

Function for ENSG00000228838 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228838 Gene

Localization for ENSG00000228838 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228838 Gene

Pathways & Interactions for ENSG00000228838 Gene

PathCards logo

SuperPathways for ENSG00000228838 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228838 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228838 Gene

Drugs & Compounds for ENSG00000228838 Gene

No Compound Related Data Available

Transcripts for ENSG00000228838 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228838 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000018D322_9606 lncRNA 675 3

Ensembl: ENST00000421637 (view in UCSC) ,

LncBook: HSALNT0006915,

NONCODE: NONHSAT003307.2,

URS0001BE956A_9606 lncRNA 1931 1

LncBook: HSALNT0006916,

URS0001BD1C39_9606 lncRNA 1711 1

LncBook: HSALNT0006917,

URS0001BF0020_9606 lncRNA 1349 1

LncBook: HSALNT0006918,

URS00009B22AB_9606 lncRNA 1295 1

NONCODE: NONHSAT148964.1,

ENSG00000228838 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228838 Gene

No ASD Table

Relevant External Links for ENSG00000228838 Gene

GeneLoc Exon Structure for
ENSG00000228838

No data available for mRNA/cDNA for ENSG00000228838 Gene

Expression for ENSG00000228838 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228838 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228838 Gene

This gene is overexpressed in Testis (x9.3).
genes like me logo Genes that share expression patterns with ENSG00000228838: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228838 Gene

Orthologs for ENSG00000228838 Gene

Evolution for ENSG00000228838 Gene

ENSEMBL:
Gene Tree for ENSG00000228838 (if available)
TreeFam:
Gene Tree for ENSG00000228838 (if available)

No data available for Orthologs for ENSG00000228838 Gene

Paralogs for ENSG00000228838 Gene

No data available for Paralogs for ENSG00000228838 Gene

Variants for ENSG00000228838 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228838 Gene

Disorders for ENSG00000228838 Gene

Additional Disease Information for ENSG00000228838

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000228838 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000228838 Gene

Publications for ENSG00000228838 Gene

No publications were found for ENSG00000228838 Gene.

No data available for Mastermind for ENSG00000228838 Gene

Products for ENSG00000228838 Gene

Sources for ENSG00000228838 Gene