Aliases for ENSG00000228809 Gene

Subcategory (RNA class) for ENSG00000228809 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000228809 Gene

  • Novel Transcript, Antisense To SNRPB2 5
  • HSALNG0128852 169
  • NONHSAG031326 94
  • Lnc-KIF16B-1 170
  • AL034428.1 5

External Ids for ENSG00000228809 Gene

Summaries for ENSG00000228809 Gene

GeneCards Summary for ENSG00000228809 Gene

ENSG00000228809 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228809 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228809 Gene

Genomics for ENSG00000228809 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228809 Gene

Promoters and enhancers for ENSG00000228809 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J016729 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +0.3 347 2.8 E2F8 SIN3A SP1 ZBTB40 SIX5 LCORL RBPJ POLR2A CTBP1 NR2F1 ENSG00000228809 NONHSAG031327.2 SNRPB2 ENSG00000230495 DSTN
GH20J016578 Enhancer 1 FANTOM5 Ensembl ENCODE 10.1 +150.5 150541 3 SP1 SP7 ZEB2 FOXA2 ZNF629 ZSCAN5C PKNOX1 OSR2 POLR2A KLF8 ENSG00000275728 KIF16B SNRPB2 ENSG00000228809 ENSG00000273998 lnc-KIF16B-5
GH20J016526 Enhancer 1 Ensembl ENCODE 9.7 +202.1 202147 6 FOXA1 RBPJ POLR2A CREB1 MIXL1 SREBF1 MNT RERE ZBTB33 ELF3 piR-32214-389 KIF16B ENSG00000228809 SNRPB2 piR-56883-099
GH20J016541 Enhancer 0.7 Ensembl ENCODE 10.4 +189.3 189347 1.2 SP1 RXRA JUND YY1 GABPA NR2F2 HNF4A REST KIF16B ENSG00000228809 SNRPB2 piR-39858-368 piR-32214-389
GH20J016532 Enhancer 0.7 Ensembl ENCODE 10.4 +194.8 194796 7.9 HLF SCRT2 SCRT1 CREB1 ZFHX2 CEBPG KIF16B ENSG00000228809 SNRPB2 piR-32214-389 piR-39858-368
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228809 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228809 Gene

Genomic Locations for ENSG00000228809 Gene
chr20:16,714,844-16,730,948
(GRCh38/hg38)
Size:
16,105 bases
Orientation:
Minus strand
chr20:16,695,489-16,711,593
(GRCh37/hg19)
Size:
16,105 bases
Orientation:
Minus strand

Genomic View for ENSG00000228809 Gene

Genes around ENSG00000228809 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228809 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228809 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228809 Gene

Proteins for ENSG00000228809 Gene

Post-translational modifications for ENSG00000228809 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228809 Gene

Domains & Families for ENSG00000228809 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228809 Gene

Function for ENSG00000228809 Gene

Phenotypes From GWAS Catalog for ENSG00000228809 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228809 Gene

Localization for ENSG00000228809 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228809 Gene

Pathways & Interactions for ENSG00000228809 Gene

PathCards logo

SuperPathways for ENSG00000228809 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228809 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000228809 Gene

Drugs & Compounds for ENSG00000228809 Gene

No Compound Related Data Available

Transcripts for ENSG00000228809 Gene

mRNA/cDNA for ENSG00000228809 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LNCipedia transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228809 Gene

No ASD Table

Relevant External Links for ENSG00000228809 Gene

GeneLoc Exon Structure for
ENSG00000228809

Expression for ENSG00000228809 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000228809 Gene

genes like me logo Genes that share expression patterns with ENSG00000228809: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228809 Gene

Orthologs for ENSG00000228809 Gene

Evolution for ENSG00000228809 Gene

ENSEMBL:
Gene Tree for ENSG00000228809 (if available)
TreeFam:
Gene Tree for ENSG00000228809 (if available)

No data available for Orthologs for ENSG00000228809 Gene

Paralogs for ENSG00000228809 Gene

No data available for Paralogs for ENSG00000228809 Gene

Variants for ENSG00000228809 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228809 Gene

Disorders for ENSG00000228809 Gene

No disorders were found for ENSG00000228809 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228809 Gene

Publications for ENSG00000228809 Gene

No publications were found for ENSG00000228809 Gene.

No data available for External Links for ENSG00000228809 Gene

Products for ENSG00000228809 Gene

Sources for ENSG00000228809 Gene