Aliases for ENSG00000228800 Gene

Subcategory (RNA class) for ENSG00000228800 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000228800 Gene

  • Novel Transcript 5
  • NONHSAG005530 94
  • HSALNG0077038 169
  • Lnc-LYZL2-1 170
  • AL590068.1 5

External Ids for ENSG00000228800 Gene

Previous GeneCards Identifiers for ENSG00000228800 Gene

  • GC10M030842

Summaries for ENSG00000228800 Gene

GeneCards Summary for ENSG00000228800 Gene

ENSG00000228800 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228800 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228800 Gene

Genomics for ENSG00000228800 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228800 Gene

Promoters and enhancers for ENSG00000228800 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J030552 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 750.6 +0.2 197 4.2 ZBTB40 FOXA1 MLX RBPJ SMARCE1 USF2 CC2D1A ELF1 HLF L3MBTL2 ENSG00000228800 RN7SL63P RF00017-636 lnc-LYZL2-3 MAP3K8 ZEB1-AS1 lnc-LYZL2-8 ENSG00000287420
GH10J030541 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +11.6 11595 2.5 SIN3A GATA3 LCORL FOXA1 MLX RBPJ SMARCE1 NR2F1 NR2F6 ATF1 lnc-LYZL2-8 MAP3K8 ZNF438 ENSG00000228800 ENSG00000287420
GH10J030550 Enhancer 0.4 ENCODE dbSUPER 0.6 +3.4 3392 0.3 BCOR MAP3K8 ENSG00000228800 lnc-LYZL2-8 ENSG00000287420
GH10J030549 Enhancer 0.5 dbSUPER 0.4 +5.3 5326 1.3 ZNF547 ZBTB8A ZNF140 ZXDB ZNF623 ZC3H11A ZFP64 ZBTB33 REST MAP3K8 ENSG00000259994 ZEB1-AS1 ENSG00000228800 lnc-LYZL2-8 ENSG00000287420
GH10J030548 Enhancer 0.4 FANTOM5 dbSUPER 0.4 +6.3 6291 0 MAP3K8 ZNF438 ENSG00000228800 lnc-LYZL2-8 ENSG00000287420
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228800 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228800 Gene

Genomic Locations for ENSG00000228800 Gene
chr10:30,553,854-30,554,483
(GRCh38/hg38)
Size:
630 bases
Orientation:
Minus strand
chr10:30,842,783-30,843,412
(GRCh37/hg19)
Size:
630 bases
Orientation:
Minus strand

Genomic View for ENSG00000228800 Gene

Genes around ENSG00000228800 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228800 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228800 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228800 Gene

Proteins for ENSG00000228800 Gene

Post-translational modifications for ENSG00000228800 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228800 Gene

Domains & Families for ENSG00000228800 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228800 Gene

Function for ENSG00000228800 Gene

Phenotypes From GWAS Catalog for ENSG00000228800 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228800 Gene

Localization for ENSG00000228800 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228800 Gene

Pathways & Interactions for ENSG00000228800 Gene

PathCards logo

SuperPathways for ENSG00000228800 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228800 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000228800 Gene

Drugs & Compounds for ENSG00000228800 Gene

No Compound Related Data Available

Transcripts for ENSG00000228800 Gene

mRNA/cDNA for ENSG00000228800 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LncBook transcripts :
(1) LNCipedia transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228800 Gene

No ASD Table

Relevant External Links for ENSG00000228800 Gene

GeneLoc Exon Structure for
ENSG00000228800

Expression for ENSG00000228800 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000228800 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228800 Gene

This gene is overexpressed in Testis (x14.9), Whole Blood (x10.5), and Spleen (x8.7).
genes like me logo Genes that share expression patterns with ENSG00000228800: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228800 Gene

Orthologs for ENSG00000228800 Gene

Evolution for ENSG00000228800 Gene

ENSEMBL:
Gene Tree for ENSG00000228800 (if available)
TreeFam:
Gene Tree for ENSG00000228800 (if available)

No data available for Orthologs for ENSG00000228800 Gene

Paralogs for ENSG00000228800 Gene

No data available for Paralogs for ENSG00000228800 Gene

Variants for ENSG00000228800 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228800 Gene

Disorders for ENSG00000228800 Gene

No disorders were found for ENSG00000228800 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228800 Gene

Publications for ENSG00000228800 Gene

No publications were found for ENSG00000228800 Gene.

No data available for External Links for ENSG00000228800 Gene

Products for ENSG00000228800 Gene

Sources for ENSG00000228800 Gene