Aliases for ENSG00000228800 Gene

Data sources for ENSG00000228800 Gene:

RNA type for ENSG00000228800 Gene

lncRNA

Aliases for ENSG00000228800 Gene

External Ids for ENSG00000228800 Gene

Previous GeneCards Identifiers for ENSG00000228800 Gene

  • GC10M030842

Summaries for ENSG00000228800 Gene

GeneCards Summary for ENSG00000228800 Gene

ENSG00000228800 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228800 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228800 Gene

Genomics for ENSG00000228800 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228800 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J030552 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 250.7 +0.2 197 4.2 MYC NCOR1 IKZF1 ZNF592 ZMYM3 ATF3 NFIC POLR2A YY1 NONO ENSG00000228800 HSALNG0077039 RN7SL63P lnc-LYZL2-3 MAP3K8 ZEB1-AS1 lnc-LYZL2-8 ENSG00000287420 LYZL2
GH10J030541 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +11.6 11595 2.5 ZNF592 CEBPA ATF3 YY1 CEBPB FOXA1 KLF11 ZFP64 RAD51 THAP11 lnc-LYZL2-8 MAP3K8 ZNF438 ENSG00000228800 ENSG00000287420 LYZL2
GH10J030550 Enhancer 0.4 ENCODE dbSUPER 0.7 +3.4 3392 0.3 BCOR MAP3K8 ENSG00000228800 lnc-LYZL2-8 ENSG00000287420 LYZL2
GH10J030549 Enhancer 0.6 dbSUPER 0.4 +5.3 5326 1.3 ZNF623 ZNF433 REST ZBTB33 ZNF547 ZNF518A ZC3H11A ZNF140 ZBTB8A ZXDB MTPAP MAP3K8 DDX10P1 ZEB1-AS1 ENSG00000228800 lnc-LYZL2-8 ENSG00000287420 LYZL2
GH10J030548 Enhancer 0.4 FANTOM5 dbSUPER 0.4 +6.3 6291 0 MAP3K8 ZNF438 ENSG00000228800 lnc-LYZL2-8 ENSG00000287420 LYZL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228800 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228800 Gene

Latest Assembly
chr10:30,553,768-30,554,483
(GRCh38/hg38)
Size:
716 bases
Orientation:
Minus strand

Previous Assembly
chr10:30,842,783-30,843,412
(GRCh37/hg19 by Ensembl)
Size:
630 bases
Orientation:
Minus strand

Genomic View for ENSG00000228800 Gene

Genes around ENSG00000228800 on UCSC Golden Path with GeneCards custom track
ENSG00000228800 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228800 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228800 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228800 Gene

Proteins for ENSG00000228800 Gene

Post-translational modifications for ENSG00000228800 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228800 Gene

Domains & Families for ENSG00000228800 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228800 Gene

Function for ENSG00000228800 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228800 Gene

Localization for ENSG00000228800 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228800 Gene

Pathways & Interactions for ENSG00000228800 Gene

PathCards logo

SuperPathways for ENSG00000228800 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228800 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228800 Gene

Drugs & Compounds for ENSG00000228800 Gene

No Compound Related Data Available

Transcripts for ENSG00000228800 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228800 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005CB974_9606 lncRNA 543 4

Ensembl: ENST00000440932 (view in UCSC) ,

LncBook: HSALNT0160800,

LNCipedia: lnc-LYZL2-1:1,

NONCODE: NONHSAT012582.2,

URS00009B44A8_9606 lncRNA 628 2

LncBook: HSALNT0160799,

NONCODE: NONHSAT156838.1,

URS0001BD4EF7_9606 lncRNA 628 1

LncBook: HSALNT0160799,

URS0001BDED04_9606 lncRNA 541 1

LncBook: HSALNT0160800,

ENSG00000228800 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228800 Gene

No ASD Table

Relevant External Links for ENSG00000228800 Gene

GeneLoc Exon Structure for
ENSG00000228800

No data available for mRNA/cDNA for ENSG00000228800 Gene

Expression for ENSG00000228800 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228800 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228800 Gene

This gene is overexpressed in Testis (x14.9), Whole Blood (x10.5), and Spleen (x8.7).
genes like me logo Genes that share expression patterns with ENSG00000228800: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228800 Gene

Orthologs for ENSG00000228800 Gene

Evolution for ENSG00000228800 Gene

ENSEMBL:
Gene Tree for ENSG00000228800 (if available)
TreeFam:
Gene Tree for ENSG00000228800 (if available)

No data available for Orthologs for ENSG00000228800 Gene

Paralogs for ENSG00000228800 Gene

No data available for Paralogs for ENSG00000228800 Gene

Variants for ENSG00000228800 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228800 Gene

Disorders for ENSG00000228800 Gene

Additional Disease Information for ENSG00000228800

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000228800 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000228800 Gene

Publications for ENSG00000228800 Gene

No publications were found for ENSG00000228800 Gene.

No data available for Mastermind for ENSG00000228800 Gene

Products for ENSG00000228800 Gene

Sources for ENSG00000228800 Gene