Aliases for ENSG00000228772 Gene

Data sources for ENSG00000228772 Gene:

RNA type for ENSG00000228772 Gene

lncRNA

Aliases for ENSG00000228772 Gene

External Ids for ENSG00000228772 Gene

Summaries for ENSG00000228772 Gene

GeneCards Summary for ENSG00000228772 Gene

ENSG00000228772 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228772 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228772 Gene

Genomics for ENSG00000228772 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228772 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J022612 Enhancer 0.8 Ensembl ENCODE 0.4 -20.0 -19967 2.8 ATF2 ZEB1 ZNF843 INSM2 MAFK ZBTB21 BHLHE40 ZNF398 GATA2 TRIM28 HDGFL1 RF00017-4874 ENSG00000228772 CASC15
GH06J022598 Enhancer 0.3 Ensembl 0.7 -4.6 -4567 0.4 PRDM1 HDGFL1 ENSG00000228772 RF00017-4874 CASC15
GH06J022582 Enhancer 0.5 Ensembl 0.4 +10.6 10633 0.4 MAFK BATF NR2F1 PKNOX1 CEBPB HDGFL1 ENSG00000228772 lnc-PRL-2 LOC105374971 CASC15
GH06J022576 Enhancer 0.3 Ensembl 0.4 +16.9 16934 0.2 JUND FOS HDGFL1 lnc-PRL-2 ENSG00000228772 LOC105374971 CASC15
GH06J022583 Enhancer 0.3 Ensembl 0.4 +9.0 9033 2 ZNF24 ENSG00000228772 lnc-PRL-2 HDGFL1 LOC105374971 CASC15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228772 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228772 Gene

Latest Assembly
chr6:22,587,175-22,593,834
(GRCh38/hg38)
Size:
6,660 bases
Orientation:
Minus strand

Previous Assembly
chr6:22,589,366-22,594,062
(GRCh37/hg19 by Ensembl)
Size:
4,697 bases
Orientation:
Minus strand

Genomic View for ENSG00000228772 Gene

Genes around ENSG00000228772 on UCSC Golden Path with GeneCards custom track
ENSG00000228772 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228772 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228772 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228772 Gene

Proteins for ENSG00000228772 Gene

Post-translational modifications for ENSG00000228772 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228772 Gene

Domains & Families for ENSG00000228772 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228772 Gene

Function for ENSG00000228772 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228772 Gene

Localization for ENSG00000228772 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228772 Gene

Pathways & Interactions for ENSG00000228772 Gene

PathCards logo

SuperPathways for ENSG00000228772 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228772 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228772 Gene

Drugs & Compounds for ENSG00000228772 Gene

No Compound Related Data Available

Transcripts for ENSG00000228772 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228772 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000154C90_9606 lncRNA 746 2

Ensembl: ENST00000427775 (view in UCSC) ,

LNCipedia: lnc-PRL-3:4,

URS00008B6EBE_9606 lncRNA 745 3

LncBook: HSALNT0102495,

LNCipedia: lnc-PRL-3:1,

NONCODE: NONHSAT108081.2,

URS00008C0637_9606 lncRNA 4245 2

LNCipedia: lnc-PRL-3:2,

NONCODE: NONHSAT108080.2,

URS00008B74B2_9606 lncRNA 2705 2

LNCipedia: lnc-PRL-3:3,

NONCODE: NONHSAT108079.2,

URS00009B516D_9606 lncRNA 781 2

LncBook: HSALNT0102502,

NONCODE: NONHSAT208870.1,

ENSG00000228772 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228772 Gene

No ASD Table

Relevant External Links for ENSG00000228772 Gene

GeneLoc Exon Structure for
ENSG00000228772

No data available for mRNA/cDNA for ENSG00000228772 Gene

Expression for ENSG00000228772 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228772 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228772 Gene

This gene is overexpressed in Testis (x19.7), Brain - Frontal Cortex (BA9) (x11.7), Pituitary (x9.9), Brain - Anterior cingulate cortex (BA24) (x6.0), and Brain - Cortex (x5.7).
genes like me logo Genes that share expression patterns with ENSG00000228772: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228772 Gene

Orthologs for ENSG00000228772 Gene

Evolution for ENSG00000228772 Gene

ENSEMBL:
Gene Tree for ENSG00000228772 (if available)
TreeFam:
Gene Tree for ENSG00000228772 (if available)

No data available for Orthologs for ENSG00000228772 Gene

Paralogs for ENSG00000228772 Gene

No data available for Paralogs for ENSG00000228772 Gene

Variants for ENSG00000228772 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228772 Gene

Disorders for ENSG00000228772 Gene

No disorders were found for ENSG00000228772 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228772 Gene

Publications for ENSG00000228772 Gene

No publications were found for ENSG00000228772 Gene.

No data available for Mastermind for ENSG00000228772 Gene

Products for ENSG00000228772 Gene

Sources for ENSG00000228772 Gene