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Aliases for ENSG00000228729 Gene

Aliases for ENSG00000228729 Gene

  • Cathepsin B (CTSB) Pseudogene 5
  • AL627308.1 5

External Ids for ENSG00000228729 Gene

Previous GeneCards Identifiers for ENSG00000228729 Gene

  • GC01P227422

Summaries for ENSG00000228729 Gene

GeneCards Summary for ENSG00000228729 Gene

ENSG00000228729 is a Pseudogene.

Additional gene information for ENSG00000228729 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000228729 Gene

Genomics for ENSG00000228729 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228729 Gene

Promoters and enhancers for ENSG00000228729 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J227235 Enhancer 1.1 Ensembl ENCODE 600.7 +1.2 1231 1 CTCF CC2D1A GTF2F1 TRIM24 ZNF644 SMARCA4 PKNOX1 GATAD2A PHF21A ATF1 ENSG00000228729 LOC100418874 CDC42BPA LINC01641 COQ8A PSEN2 LOC100126822
GH01J227243 Enhancer 0.8 ENCODE 0.4 +9.9 9875 1.9 ELF3 GTF2F1 CDC5L SP1 PPARG HNF1A ZNF384 SMARCA4 RXRA ZIC2 C1orf35 CDC42BPA ENSG00000228729 LOC100126822
GH01J227260 Enhancer 0.8 Ensembl 0.3 +26.3 26276 0.5 CC2D1A CBFA2T2 MLLT1 TRIM24 PRDM1 SMARCA4 MTA1 GMEB1 DPF2 IKZF1 CDC42BPA LOC100126822 ENSG00000228729
GH01J227240 Enhancer 0.3 Ensembl 0.4 +6.4 6432 0.2 ZNF585B C1orf35 ZNF678 CDC42BPA ENSG00000228729 LOC100126822
GH01J227236 Enhancer 0.2 Ensembl 0.7 +3.0 3032 1 CDC42BPA ENSG00000228729 LOC100126822
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228729 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228729 Gene

Genomic Locations for ENSG00000228729 Gene
chr1:227,234,269-227,235,355
(GRCh38/hg38)
Size:
1,087 bases
Orientation:
Plus strand

Genomic View for ENSG00000228729 Gene

Genes around ENSG00000228729 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228729 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228729 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228729 Gene

Proteins for ENSG00000228729 Gene

Post-translational modifications for ENSG00000228729 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228729 Gene

Domains & Families for ENSG00000228729 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000228729 Gene

Function for ENSG00000228729 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228729 Gene

Localization for ENSG00000228729 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228729 Gene

Pathways & Interactions for ENSG00000228729 Gene

PathCards logo

SuperPathways for ENSG00000228729 Gene

No Data Available

Interacting Proteins for ENSG00000228729 Gene

Gene Ontology (GO) - Biological Process for ENSG00000228729 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000228729 Gene

Drugs & Compounds for ENSG00000228729 Gene

No Compound Related Data Available

Transcripts for ENSG00000228729 Gene

mRNA/cDNA for ENSG00000228729 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228729 Gene

No ASD Table

Relevant External Links for ENSG00000228729 Gene

GeneLoc Exon Structure for
ENSG00000228729

Expression for ENSG00000228729 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228729 Gene

Orthologs for ENSG00000228729 Gene

Evolution for ENSG00000228729 Gene

ENSEMBL:
Gene Tree for ENSG00000228729 (if available)
TreeFam:
Gene Tree for ENSG00000228729 (if available)

No data available for Orthologs for ENSG00000228729 Gene

Paralogs for ENSG00000228729 Gene

No data available for Paralogs for ENSG00000228729 Gene

Variants for ENSG00000228729 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228729 Gene

Disorders for ENSG00000228729 Gene

No disorders were found for ENSG00000228729 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228729 Gene

Publications for ENSG00000228729 Gene

No publications were found for ENSG00000228729 Gene.

No data available for External Links for ENSG00000228729 Gene

Products for ENSG00000228729 Gene

Sources for ENSG00000228729 Gene

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