Aliases for ENSG00000228719 Gene

Subcategory (RNA class) for ENSG00000228719 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000228719 Gene

  • Novel Transcript 5
  • NONHSAG033836 94
  • AL022313.2 5
  • Lnc-TXN2-1 170

External Ids for ENSG00000228719 Gene

Previous GeneCards Identifiers for ENSG00000228719 Gene

  • GC22M036841

Summaries for ENSG00000228719 Gene

GeneCards Summary for ENSG00000228719 Gene

ENSG00000228719 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228719 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228719 Gene

Genomics for ENSG00000228719 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228719 Gene

Promoters and enhancers for ENSG00000228719 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J036449 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 8.5 -6.2 -6221 24 ZBTB40 CTCF SREBF1 ZBTB6 FOXA1 MLX RBPJ SMARCE1 POLR2A TCF7L2 LOC105373018 piR-60945 CSF2RB APOL3 FOXRED2 ENSG00000252225 IFT27 RPS15AP38 TXN2 APOL4
GH22J036348 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.6 +86.0 85956 41.2 GTF3C2 ZNF785 ZNF24 ZBTB40 SP1 FOXA1 ZBTB6 LCORL MLX RBPJ MYH9 EIF3D MCM5 APOL3 TXN2 ENSG00000252225 FOXRED2 APOL1 CSF2RB RPS15AP38
GH22J036394 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 6 +57.8 57839 5.5 RBPJ HLF SP1 MAFK CBFA2T2 CEBPG SP7 ZSCAN21 SMARCA4 PPARG ENSG00000252225 FOXRED2 ENSG00000228719 TXN2 EIF3D MYH9 piR-50437-439 ENSG00000223695 LOC105377199 RF00017-3826
GH22J036443 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +10.4 10394 3.1 MIXL1 DACH1 ELF3 SP1 MLLT1 SP5 ZNF384 KAT8 RXRA REST TXN2 FOXRED2 ENSG00000252225 ENSG00000228719
GH22J036450 Enhancer 0.6 ENCODE dbSUPER 0.4 +6.2 6195 0.2 ELF3 ZIC2 REST ARID4B ZNF48 ENSG00000252225 ENSG00000228719
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228719 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228719 Gene

Genomic Locations for ENSG00000228719 Gene
chr22:36,445,395-36,454,944
(GRCh38/hg38)
Size:
9,550 bases
Orientation:
Minus strand
chr22:36,841,445-36,850,991
(GRCh37/hg19)
Size:
9,547 bases
Orientation:
Minus strand

Genomic View for ENSG00000228719 Gene

Genes around ENSG00000228719 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228719 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228719 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228719 Gene

Proteins for ENSG00000228719 Gene

Post-translational modifications for ENSG00000228719 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228719 Gene

Domains & Families for ENSG00000228719 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228719 Gene

Function for ENSG00000228719 Gene

Phenotypes From GWAS Catalog for ENSG00000228719 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228719 Gene

Localization for ENSG00000228719 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228719 Gene

Pathways & Interactions for ENSG00000228719 Gene

PathCards logo

SuperPathways for ENSG00000228719 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228719 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000228719 Gene

Drugs & Compounds for ENSG00000228719 Gene

No Compound Related Data Available

Transcripts for ENSG00000228719 Gene

mRNA/cDNA for ENSG00000228719 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) NONCODE transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228719 Gene

No ASD Table

Relevant External Links for ENSG00000228719 Gene

GeneLoc Exon Structure for
ENSG00000228719

Expression for ENSG00000228719 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000228719 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228719 Gene

This gene is overexpressed in Testis (x10.1), Whole Blood (x9.2), and Muscle - Skeletal (x5.8).
genes like me logo Genes that share expression patterns with ENSG00000228719: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228719 Gene

Orthologs for ENSG00000228719 Gene

Evolution for ENSG00000228719 Gene

ENSEMBL:
Gene Tree for ENSG00000228719 (if available)
TreeFam:
Gene Tree for ENSG00000228719 (if available)

No data available for Orthologs for ENSG00000228719 Gene

Paralogs for ENSG00000228719 Gene

No data available for Paralogs for ENSG00000228719 Gene

Variants for ENSG00000228719 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228719 Gene

Disorders for ENSG00000228719 Gene

No disorders were found for ENSG00000228719 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228719 Gene

Publications for ENSG00000228719 Gene

No publications were found for ENSG00000228719 Gene.

No data available for External Links for ENSG00000228719 Gene

Products for ENSG00000228719 Gene

Sources for ENSG00000228719 Gene