Aliases for ENSG00000228625 Gene

Data sources for ENSG00000228625 Gene:

RNA type for ENSG00000228625 Gene

lncRNA

Aliases for ENSG00000228625 Gene

External Ids for ENSG00000228625 Gene

Previous GeneCards Identifiers for ENSG00000228625 Gene

  • GC01P227366

Summaries for ENSG00000228625 Gene

GeneCards Summary for ENSG00000228625 Gene

ENSG00000228625 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228625 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228625 Gene

Genomics for ENSG00000228625 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228625 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J227173 Enhancer 0.6 Ensembl ENCODE 0.7 -4.2 -4186 1.7 MEIS2 KDM1A CEBPB HDAC2 CDC42BPA LINC01641 ENSG00000228625 MN308870 COQ8A
GH01J227170 Enhancer 0.7 Ensembl 0.4 -7.5 -7532 1.2 NCOR1 NFIC TAL1 STAT5A FOXM1 NCOA1 FOXK2 ZNF384 ZEB2 TCF12 CDC42BPA ENSG00000228625 MN308870 COQ8A
GH01J227191 Enhancer 0.8 Ensembl ENCODE 0.4 +13.8 13832 1.5 MAFF ZNF316 NFE2 MAFK EHMT2 MAFG BACH1 BHLHE40 NFE2L2 HDGF CDC42BPA ENSG00000228625 piR-55036-009 COQ8A
GH01J227135 Enhancer 0.9 Ensembl ENCODE 0.3 -43.1 -43131 2 MYC IKZF1 TAL1 JUND FOXM1 SCRT1 ZEB2 ZC3H8 TCF12 ATF4 COQ8A CDC42BPA MN308870 ENSG00000228625
GH01J227225 Enhancer 0.7 Ensembl ENCODE 0.3 +47.7 47669 2.4 CEBPB JUND L3MBTL2 HDAC1 KLF1 SMARCE1 PKNOX1 IKZF1 AFF1 HMBOX1 CDC42BPA COQ8A piR-55036-009 ENSG00000228625 lnc-ITPKB-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228625 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228625 Gene

Latest Assembly
chr1:227,178,332-227,183,444
(GRCh38/hg38)
Size:
5,113 bases
Orientation:
Plus strand

Previous Assembly
chr1:227,366,034-227,371,145
(GRCh37/hg19 by Ensembl)
Size:
5,112 bases
Orientation:
Plus strand

Genomic View for ENSG00000228625 Gene

Genes around ENSG00000228625 on UCSC Golden Path with GeneCards custom track
ENSG00000228625 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228625 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228625 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228625 Gene

Proteins for ENSG00000228625 Gene

Post-translational modifications for ENSG00000228625 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228625 Gene

Domains & Families for ENSG00000228625 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228625 Gene

Function for ENSG00000228625 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228625 Gene

Localization for ENSG00000228625 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228625 Gene

Pathways & Interactions for ENSG00000228625 Gene

PathCards logo

SuperPathways for ENSG00000228625 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228625 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228625 Gene

Drugs & Compounds for ENSG00000228625 Gene

No Compound Related Data Available

Transcripts for ENSG00000228625 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228625 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003BAE6A_9606 lncRNA 814 4

Ensembl: ENST00000424451 (view in UCSC) ,

LncBook: HSALNT0023185,

LNCipedia: lnc-COQ8A-2:1,

NONCODE: NONHSAT009915.2,

URS0001BCE942_9606 lncRNA 814 1

LncBook: HSALNT0023185,

ENSG00000228625 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228625 Gene

No ASD Table

Relevant External Links for ENSG00000228625 Gene

GeneLoc Exon Structure for
ENSG00000228625

No data available for mRNA/cDNA for ENSG00000228625 Gene

Expression for ENSG00000228625 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228625 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228625 Gene

This gene is overexpressed in Testis (x5.0).
genes like me logo Genes that share expression patterns with ENSG00000228625: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228625 Gene

Orthologs for ENSG00000228625 Gene

Evolution for ENSG00000228625 Gene

ENSEMBL:
Gene Tree for ENSG00000228625 (if available)
TreeFam:
Gene Tree for ENSG00000228625 (if available)

No data available for Orthologs for ENSG00000228625 Gene

Paralogs for ENSG00000228625 Gene

No data available for Paralogs for ENSG00000228625 Gene

Variants for ENSG00000228625 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228625 Gene

Disorders for ENSG00000228625 Gene

No disorders were found for ENSG00000228625 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228625 Gene

Publications for ENSG00000228625 Gene

No publications were found for ENSG00000228625 Gene.

No data available for Mastermind for ENSG00000228625 Gene

Products for ENSG00000228625 Gene

Sources for ENSG00000228625 Gene