Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ENSG00000228539 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000228539 Gene

  • AL157413.1 5

External Ids for ENSG00000228539 Gene

Summaries for ENSG00000228539 Gene

GeneCards Summary for ENSG00000228539 Gene

ENSG00000228539 is an RNA Gene.

Additional gene information for ENSG00000228539 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000228539 Gene

Genomics for ENSG00000228539 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228539 Gene

Promoters and enhancers for ENSG00000228539 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J024501 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 650.7 -0.6 -555 2.2 USF2 RAD51 SCRT2 CREB1 FOS ZBTB33 FOSL2 MAFK ENSG00000228539 SYNDIG1 GC20M024591
GH20J024497 Enhancer 0.9 ENCODE dbSUPER 0.7 +4.3 4325 0.2 PKNOX1 NFIB SIN3A ZIC2 ZNF507 GATA3 ZNF366 PRDM10 ZNF600 SMARCE1 ENSG00000228539 LOC105372585 SYNDIG1
GH20J024492 Enhancer 0.8 ENCODE dbSUPER 0.4 +9.8 9776 1 CTCF HLF BACH1 MAFG SIN3A NFIC GLIS1 NFE2 ENSG00000228539 LOC105372585 SYNDIG1
GH20J024488 Enhancer 0.6 dbSUPER 0.4 +13.2 13169 2.3 RAD51 SUZ12 HLF ZSCAN4 ZNF207 PAX8 MNT ZNF24 ENSG00000228539 LOC105372585 SYNDIG1
GH20J024499 Enhancer 0.3 dbSUPER 0.7 +2.3 2304 1.3 ZNF366 ENSG00000228539 LOC105372585 SYNDIG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228539 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228539 Gene

Genomic Locations for ENSG00000228539 Gene
chr20:24,491,472-24,502,345
(GRCh38/hg38)
Size:
10,874 bases
Orientation:
Minus strand
chr20:24,472,108-24,482,981
(GRCh37/hg19)
Size:
10,874 bases
Orientation:
Minus strand

Genomic View for ENSG00000228539 Gene

Genes around ENSG00000228539 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228539 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228539 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228539 Gene

Proteins for ENSG00000228539 Gene

Post-translational modifications for ENSG00000228539 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228539 Gene

Domains & Families for ENSG00000228539 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000228539 Gene

Function for ENSG00000228539 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228539 Gene

Localization for ENSG00000228539 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228539 Gene

Pathways & Interactions for ENSG00000228539 Gene

SuperPathways for ENSG00000228539 Gene

No Data Available

Interacting Proteins for ENSG00000228539 Gene

Gene Ontology (GO) - Biological Process for ENSG00000228539 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000228539 Gene

Drugs & Compounds for ENSG00000228539 Gene

No Compound Related Data Available

Transcripts for ENSG00000228539 Gene

mRNA/cDNA for ENSG00000228539 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228539 Gene

No ASD Table

Relevant External Links for ENSG00000228539 Gene

GeneLoc Exon Structure for
ENSG00000228539

Expression for ENSG00000228539 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000228539 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228539 Gene

This gene is overexpressed in Brain - Cerebellum (x9.8), Brain - Cerebellar Hemisphere (x7.3), and Brain - Cortex (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000228539: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228539 Gene

Orthologs for ENSG00000228539 Gene

Evolution for ENSG00000228539 Gene

ENSEMBL:
Gene Tree for ENSG00000228539 (if available)
TreeFam:
Gene Tree for ENSG00000228539 (if available)

No data available for Orthologs for ENSG00000228539 Gene

Paralogs for ENSG00000228539 Gene

No data available for Paralogs for ENSG00000228539 Gene

Variants for ENSG00000228539 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228539 Gene

Disorders for ENSG00000228539 Gene

No disorders were found for ENSG00000228539 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228539 Gene

Publications for ENSG00000228539 Gene

No publications were found for ENSG00000228539 Gene.

Products for ENSG00000228539 Gene

Sources for ENSG00000228539 Gene

Content
Loading form....