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Aliases for ENSG00000228488 Gene
Subcategory (RNA class) for ENSG00000228488 Gene
lncRNA
Quality Score for this RNA gene is
14
Aliases for ENSG00000228488 Gene
External Ids for ENSG00000228488 Gene
- Ensembl: ENSG00000228488
Previous GeneCards Identifiers for ENSG00000228488 Gene
- GC02M101338
Summaries for ENSG00000228488 Gene
GeneCards Summary for ENSG00000228488 Gene
ENSG00000228488 is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for ENSG00000228488 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228488 Gene
Genomics for ENSG00000228488 Gene
GeneHancer (GH) Regulatory Elements for ENSG00000228488 Gene
Promoters and enhancers for ENSG00000228488 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J100731 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.4 | -10.2 | -10201 | 3.8 | MYC RAD21 MAX SP1 TFE3 CEBPG CEBPA RXRA CEBPB ATF7 | NPAS2 ENSG00000230140 lnc-CHST10-5 lnc-NPAS2-1 ENSG00000228488 | |
| GH02J100730 | Enhancer | 0.8 | ENCODE | 0.4 | -7.6 | -7592 | 0.2 | CTCF RBPJ NR2F6 MIXL1 MYC MAX RAD21 ELF3 CEBPG KAT8 | NPAS2 ENSG00000232034 ENSG00000228488 lnc-NPAS2-1 lnc-CHST10-5 | |
| GH02J100726 | Enhancer | 0.2 | Ensembl | 0.6 | -4.1 | -4119 | 1.2 | ENSG00000223947 RPL31 NPAS2 ENSG00000230140 ENSG00000232034 ENSG00000228488 lnc-NPAS2-1 lnc-CHST10-5 | ||
| GH02J100717 | Enhancer | 0.2 | ENCODE | 0.6 | +4.6 | 4574 | 0.8 | ENSG00000232034 NPAS2 ENSG00000230140 ENSG00000228488 piR-61614-062 lnc-CHST10-5 | ||
| GH02J100720 | Enhancer | 0.2 | Ensembl | 0.6 | +2.6 | 2581 | 0.2 | NPAS2 ENSG00000230140 ENSG00000223947 RPL31 ENSG00000232034 ENSG00000228488 piR-61614-062 lnc-CHST10-5 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ENSG00000228488 on UCSC Golden Path with GeneCards custom track
Genomic Locations for ENSG00000228488 Gene
Genomic Locations for ENSG00000228488 Gene
- chr2:100,722,221-100,722,882
- (GRCh38/hg38)
- Size:
- 662 bases
- Orientation:
- Minus strand
- chr2:101,338,683-101,339,344
- (GRCh37/hg19)
- Size:
- 662 bases
- Orientation:
- Minus strand
Genomic View for ENSG00000228488 Gene
Genes around ENSG00000228488 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q11.2 by Ensembl
ENSG00000228488 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000228488 Gene
Proteins for ENSG00000228488 Gene
Post-translational modifications for ENSG00000228488 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000228488
- Origene Custom Protein Services for ENSG00000228488
No data available for DME Specific Peptides for ENSG00000228488 Gene
Domains & Families for ENSG00000228488 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228488 Gene
Function for ENSG00000228488 Gene
Phenotypes From GWAS Catalog for ENSG00000228488 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228488 Gene
Localization for ENSG00000228488 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228488 Gene
Transcripts for ENSG00000228488 Gene
mRNA/cDNA for ENSG00000228488 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000443030 236 bps (ENST00000443030.1)
- (1) RNACentral transcripts :
- (1) NONCODE transcripts :
- (1) LncBook transcripts :
- (1) LNCipedia transcripts :
CRISPR Products
- Browse CRISPR knockouts for ENSG00000228488
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for ENSG00000228488 Gene
- GeneLoc Exon Structure for
- ENSG00000228488
Expression for ENSG00000228488 Gene
mRNA differential expression in normal tissues according to GTEx for ENSG00000228488 Gene
This gene is overexpressed in Testis (x53.0).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228488 Gene
Orthologs for ENSG00000228488 Gene
No data available for Orthologs for ENSG00000228488 Gene
Paralogs for ENSG00000228488 Gene
No data available for Paralogs for ENSG00000228488 Gene
Variants for ENSG00000228488 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228488 Gene
Disorders for ENSG00000228488 Gene
No disorders were found for ENSG00000228488 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228488 Gene
Publications for ENSG00000228488 Gene
No publications were found for ENSG00000228488 Gene.
No data available for External Links for ENSG00000228488 Gene
Products for ENSG00000228488 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000228488
- Origene Custom Protein Services for ENSG00000228488
- Browse OriGene Inhibitory RNA Products For ENSG00000228488
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for ENSG00000228488
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ENSG00000228488
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for ENSG00000228488
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for ENSG00000228488
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ENSG00000228488
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for ENSG00000228488
Sources for ENSG00000228488 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource