Aliases for ENSG00000228427 Gene

Subcategory (RNA class) for ENSG00000228427 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000228427 Gene

  • Novel Transcript 5
  • HSALNG0138463 169
  • NONHSAG054718 94
  • Lnc-IL2RG-5 170
  • Lnc-ZMYM3-1 170
  • AL590764.1 5

External Ids for ENSG00000228427 Gene

Previous GeneCards Identifiers for ENSG00000228427 Gene

  • GC0XM070403

Summaries for ENSG00000228427 Gene

GeneCards Summary for ENSG00000228427 Gene

ENSG00000228427 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228427 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228427 Gene

Genomics for ENSG00000228427 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228427 Gene

Promoters and enhancers for ENSG00000228427 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ071195 Promoter/Enhancer 1.1 FANTOM5 Ensembl ENCODE 750.6 +0.8 786 3.5 ETV6 IKZF1 IKZF2 ZNF143 ELF1 RUNX3 NBN IRF4 ATF2 ATF7 ENSG00000228427 IL2RG CXCR3 MED12 TAF1 lnc-NLGN3-2
GH0XJ071300 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 12.7 -104.2 -104162 2.9 POLR2A DACH1 SP1 ZNF24 IKZF1 CEBPA PATZ1 OSR2 FOXA2 MEF2D ITGB1BP2 lnc-ITGB1BP2-2-002 ZMYM3 ENSG00000228427 TAF1 MED12 IL2RG piR-50444-497 NONO RF00017-8507
GH0XJ071293 Enhancer 0.3 Ensembl 12.2 -95.0 -94992 0.4 JUND ZMYM3 TAF1 GJB1 ENSG00000228427 lnc-ITGB1BP2-2-001 lnc-ITGB1BP2-2-002 NONO RF00017-8507
GH0XJ071291 Enhancer 0.2 Ensembl 12.2 -93.9 -93893 1.4 ZMYM3 TAF1 GJB1 ENSG00000228427 NONO lnc-ITGB1BP2-2-001 lnc-ITGB1BP2-2-002 RF00017-8507
GH0XJ071181 Promoter/Enhancer 2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +15.3 15337 3.5 SP1 ZBTB40 SMARCE1 POLR2A USF2 NR2F6 FOS CREB1 ZNF362 MYC lnc-IL2RG-5 lnc-NLGN3-2 TAF1 NONO MED12 ENSG00000213018 OGT P2RY4 ENSG00000229601 RPS23P8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228427 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228427 Gene

Genomic Locations for ENSG00000228427 Gene
chrX:71,183,384-71,198,208
(GRCh38/hg38)
Size:
14,825 bases
Orientation:
Minus strand
chrX:70,403,409-70,418,025
(GRCh37/hg19)
Size:
14,617 bases
Orientation:
Minus strand

Genomic View for ENSG00000228427 Gene

Genes around ENSG00000228427 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228427 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228427 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228427 Gene

Proteins for ENSG00000228427 Gene

Post-translational modifications for ENSG00000228427 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228427 Gene

Domains & Families for ENSG00000228427 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228427 Gene

Function for ENSG00000228427 Gene

Phenotypes From GWAS Catalog for ENSG00000228427 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228427 Gene

Localization for ENSG00000228427 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228427 Gene

Pathways & Interactions for ENSG00000228427 Gene

PathCards logo

SuperPathways for ENSG00000228427 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228427 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000228427 Gene

Drugs & Compounds for ENSG00000228427 Gene

No Compound Related Data Available

Transcripts for ENSG00000228427 Gene

mRNA/cDNA for ENSG00000228427 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(8) LNCipedia transcripts :
(2) NONCODE transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228427 Gene

No ASD Table

Relevant External Links for ENSG00000228427 Gene

GeneLoc Exon Structure for
ENSG00000228427

Expression for ENSG00000228427 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000228427 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228427 Gene

This gene is overexpressed in Whole Blood (x9.1) and Spleen (x8.5).
genes like me logo Genes that share expression patterns with ENSG00000228427: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228427 Gene

Orthologs for ENSG00000228427 Gene

Evolution for ENSG00000228427 Gene

ENSEMBL:
Gene Tree for ENSG00000228427 (if available)
TreeFam:
Gene Tree for ENSG00000228427 (if available)

No data available for Orthologs for ENSG00000228427 Gene

Paralogs for ENSG00000228427 Gene

No data available for Paralogs for ENSG00000228427 Gene

Variants for ENSG00000228427 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228427 Gene

Disorders for ENSG00000228427 Gene

No disorders were found for ENSG00000228427 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228427 Gene

Publications for ENSG00000228427 Gene

No publications were found for ENSG00000228427 Gene.

No data available for External Links for ENSG00000228427 Gene

Products for ENSG00000228427 Gene

Sources for ENSG00000228427 Gene