Aliases for ENSG00000228426 Gene

Subcategory (RNA class) for ENSG00000228426 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000228426 Gene

  • Novel Transcript 5
  • NONHSAG005728.2 91
  • HSALNG0077578 164
  • Lnc-ZNF485-3 165
  • AL645634.1 5

External Ids for ENSG00000228426 Gene

Previous GeneCards Identifiers for ENSG00000228426 Gene

  • GC10P044161

Summaries for ENSG00000228426 Gene

GeneCards Summary for ENSG00000228426 Gene

ENSG00000228426 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228426 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228426 Gene

Genomics for ENSG00000228426 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228426 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043672 Enhancer 0.3 ENCODE 14.4 +6.6 6640 0.2 CTCF ENSG00000228426 ZNF32 CXCL12 piR-37189 ZNF32-AS3 LOC107984189
GH10J043679 Enhancer 0.7 Ensembl 6 +14.3 14274 0.9 PRDM10 JUND NFE2 ZNF316 MAFF FOS MAFK FOSL1 MAFG FOSL2 ZNF32 CXCL12 ENSG00000228426 piR-37189 LOC107984189
GH10J043623 Enhancer 0.6 ENCODE 5.6 -42.2 -42163 0.4 PRDM1 IRF2 NFE2 ZNF318 MAFG EHMT2 FOXM1 NFATC3 ZNF507 ZBTB40 piR-40136 ZNF32-AS2 BMS1 ZNF485 ENSG00000228426 lnc-ZNF32-5 ZNF32
GH10J043689 Promoter/Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas 0.4 +24.4 24420 1.5 CTCF ZNF629 ZNF692 LARP7 MTA2 ZNF143 ZIC2 RXRB POLR2A PATZ1 ZNF32 CXCL12 piR-37189 ENSG00000228426 LOC107984189
GH10J043671 Enhancer 0.9 Ensembl ENCODE 0.4 +6.2 6205 0.5 CREB1 GATAD2A CTCF FOXA1 RXRB ZNF24 REST RAD21 TRIM22 RFX1 ZNF32 CXCL12 ENSG00000228426 piR-37189 ZNF32-AS3 LOC107984189
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228426 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228426 Gene

Genomic Locations for ENSG00000228426 Gene
chr10:43,665,668-43,667,006
(GRCh38/hg38)
Size:
1,339 bases
Orientation:
Plus strand
chr10:44,161,116-44,162,453
(GRCh37/hg19)
Size:
1,338 bases
Orientation:
Plus strand

Genomic View for ENSG00000228426 Gene

Genes around ENSG00000228426 on UCSC Golden Path with GeneCards custom track
ENSG00000228426 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228426 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228426 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228426 Gene

Proteins for ENSG00000228426 Gene

Post-translational modifications for ENSG00000228426 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228426 Gene

Domains & Families for ENSG00000228426 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228426 Gene

Function for ENSG00000228426 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228426 Gene

Localization for ENSG00000228426 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228426 Gene

Pathways & Interactions for ENSG00000228426 Gene

PathCards logo

SuperPathways for ENSG00000228426 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228426 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228426 Gene

Drugs & Compounds for ENSG00000228426 Gene

No Compound Related Data Available

Transcripts for ENSG00000228426 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228426 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000033FFE6_9606 lncRNA 462 4

Ensembl: ENST00000418426 (view in UCSC) ,

LncBook: HSALNT0161901,

LNCipedia: lnc-ZNF485-3:1,

NONCODE: NONHSAT012987.2,

URS00009BA1C3_9606 lncRNA 462 2

LncBook: HSALNT0161902,

NONCODE: NONHSAT155428.1,

ENSG00000228426 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228426 Gene

No ASD Table

Relevant External Links for ENSG00000228426 Gene

GeneLoc Exon Structure for
ENSG00000228426

No data available for mRNA/cDNA for ENSG00000228426 Gene

Expression for ENSG00000228426 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228426 Gene

genes like me logo Genes that share expression patterns with ENSG00000228426: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228426 Gene

Orthologs for ENSG00000228426 Gene

Evolution for ENSG00000228426 Gene

ENSEMBL:
Gene Tree for ENSG00000228426 (if available)
TreeFam:
Gene Tree for ENSG00000228426 (if available)

No data available for Orthologs for ENSG00000228426 Gene

Paralogs for ENSG00000228426 Gene

No data available for Paralogs for ENSG00000228426 Gene

Variants for ENSG00000228426 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228426 Gene

Disorders for ENSG00000228426 Gene

No disorders were found for ENSG00000228426 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228426 Gene

Publications for ENSG00000228426 Gene

No publications were found for ENSG00000228426 Gene.

No data available for Mastermind for ENSG00000228426 Gene

Products for ENSG00000228426 Gene

Sources for ENSG00000228426 Gene