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Aliases for ENSG00000228404 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000228404 Gene

  • AP001468.1 5

External Ids for ENSG00000228404 Gene

Previous GeneCards Identifiers for ENSG00000228404 Gene

  • GC21P047604

Summaries for ENSG00000228404 Gene

GeneCards Summary for ENSG00000228404 Gene

ENSG00000228404 is an RNA Gene.

Additional gene information for ENSG00000228404 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000228404 Gene

Genomics for ENSG00000228404 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228404 Gene

Promoters and enhancers for ENSG00000228404 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J046182 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 660.6 -1.0 -997 4.1 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A ZBTB7B TCF12 POLR2B ZNF766 SPATC1L ENSG00000228404 MCM3AP YBEY MCM3AP-AS1 COL6A2 LOC105372842 ENSG00000228137 FTCD LSS
GH21J046454 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 4.9 +272.4 272389 6.3 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 DIP2A GC21M046494 MCM3AP ENSG00000228137 MCM3AP-AS1 ENSG00000228235 SPATC1L PRMT2 ENSG00000227438 COL6A1
GH21J046187 Enhancer 1.3 Ensembl ENCODE dbSUPER 8.3 +4.6 4625 4.5 HDGF PKNOX1 ATF1 ARNT SIN3A ZNF48 ATF7 FOS CAVIN1 REST MCM3AP YBEY SPATC1L MCM3AP-AS1 ENSG00000228404 FTCD ENSG00000223901 LSS
GH21J046317 Promoter/Enhancer 1.4 EPDnew ENCODE dbSUPER 7.4 +133.3 133313 0.9 SIX4 USF1 SIN3A YBX1 BMI1 ZIC2 GLIS2 POLR2A RFX1 SP3 C21orf58 SPATC1L LSS MCM3AP-AS1 ENSG00000223901 ENSG00000228404 GC21P046292 GC21P046294
GH21J046207 Enhancer 0.6 dbSUPER 15.3 +27.7 27731 11.3 CTCF KLF1 KLF17 REST ZIC2 RAD21 THRB ZFHX2 GLIS2 GLIS1 YBEY SPATC1L MCM3AP ENSG00000228404 MCM3AP-AS1 DIP2A LSS ENSG00000239415 FTCD ENSG00000223901
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228404 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228404 Gene

Genomic Locations for ENSG00000228404 Gene
chr21:46,185,079-46,188,941
(GRCh38/hg38)
Size:
3,863 bases
Orientation:
Plus strand
chr21:47,604,993-47,608,855
(GRCh37/hg19)
Size:
3,863 bases
Orientation:
Plus strand

Genomic View for ENSG00000228404 Gene

Genes around ENSG00000228404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228404 Gene

Proteins for ENSG00000228404 Gene

Post-translational modifications for ENSG00000228404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228404 Gene

Domains & Families for ENSG00000228404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000228404 Gene

Function for ENSG00000228404 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228404 Gene

Localization for ENSG00000228404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228404 Gene

Pathways & Interactions for ENSG00000228404 Gene

SuperPathways for ENSG00000228404 Gene

No Data Available

Interacting Proteins for ENSG00000228404 Gene

Gene Ontology (GO) - Biological Process for ENSG00000228404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000228404 Gene

Drugs & Compounds for ENSG00000228404 Gene

No Compound Related Data Available

Transcripts for ENSG00000228404 Gene

mRNA/cDNA for ENSG00000228404 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228404 Gene

No ASD Table

Relevant External Links for ENSG00000228404 Gene

GeneLoc Exon Structure for
ENSG00000228404

Expression for ENSG00000228404 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000228404 Gene

genes like me logo Genes that share expression patterns with ENSG00000228404: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228404 Gene

Orthologs for ENSG00000228404 Gene

Evolution for ENSG00000228404 Gene

ENSEMBL:
Gene Tree for ENSG00000228404 (if available)
TreeFam:
Gene Tree for ENSG00000228404 (if available)

No data available for Orthologs for ENSG00000228404 Gene

Paralogs for ENSG00000228404 Gene

No data available for Paralogs for ENSG00000228404 Gene

Variants for ENSG00000228404 Gene

Variation tolerance for ENSG00000228404 Gene

Gene Damage Index Score: 1.98; 36.57% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for ENSG00000228404 Gene

Disorders for ENSG00000228404 Gene

No disorders were found for ENSG00000228404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228404 Gene

Publications for ENSG00000228404 Gene

No publications were found for ENSG00000228404 Gene.

Products for ENSG00000228404 Gene

Sources for ENSG00000228404 Gene

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