Aliases for ENSG00000228318 Gene

Subcategory (RNA class) for ENSG00000228318 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000228318 Gene

  • Novel Transcript 5
  • NONHSAG032903.2 91
  • Lnc-TMPRSS2-1 165
  • AP001610.2 5

External Ids for ENSG00000228318 Gene

Previous GeneCards Identifiers for ENSG00000228318 Gene

  • GC21M042813

Summaries for ENSG00000228318 Gene

GeneCards Summary for ENSG00000228318 Gene

ENSG00000228318 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228318 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228318 Gene

Genomics for ENSG00000228318 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228318 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J041446 Enhancer 0.6 ENCODE 600.7 -1.1 -1081 0.2 SMARCC1 CEBPB CHD2 JUN RCOR1 JUND MAX EP300 RFX5 SMC3 ENSG00000228318 MX2 MX1 NONHSAG032905.2 TMPRSS2
GH21J041365 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 +76.8 76841 5.8 CREB1 GATAD2A CTCF ZBTB33 RFX1 RCOR2 POLR2A BACH1 JUND LARP7 MX2 MX1 ENSG00000228318 FAM3B lnc-FAM3B-3 piR-38351-289
GH21J041465 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.2 -21.3 -21287 2.4 ZNF600 SOX13 NR2F1 MAFK EBF1 ZSCAN16 ATF7 MTA2 MAFF BHLHE40 lnc-RIPK4-6 MX1 ENSG00000228318 ENSG00000207503 piR-40250-012 TMPRSS2
GH21J041283 Enhancer 0.9 Ensembl ENCODE 10 +162.3 162278 0.5 CEBPG CTCF PRDM1 ZNF143 REST RAD21 TRIM22 CEBPA SIN3A CEBPB MX2 MX1 LINC00112 LINC00479 ENSG00000228318 BACE2 lnc-BACE2-1 FAM3B
GH21J041396 Enhancer 0.8 Ensembl ENCODE 11.2 +49.1 49108 4.4 CREB1 ATF7 FOXA1 ZNF512B CEBPB ZKSCAN1 CTBP1 KLF4 ZNF217 ATF2 MX1 MX2 ENSG00000228318 piR-38351-289 lnc-MX1-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228318 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228318 Gene

Genomic Locations for ENSG00000228318 Gene
chr21:41,441,056-41,445,708
(GRCh38/hg38)
Size:
4,653 bases
Orientation:
Minus strand
chr21:42,813,321-42,814,669
(GRCh37/hg19)
Size:
1,349 bases
Orientation:
Minus strand

Genomic View for ENSG00000228318 Gene

Genes around ENSG00000228318 on UCSC Golden Path with GeneCards custom track
ENSG00000228318 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228318 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228318 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228318 Gene

Proteins for ENSG00000228318 Gene

Post-translational modifications for ENSG00000228318 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228318 Gene

Domains & Families for ENSG00000228318 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228318 Gene

Function for ENSG00000228318 Gene

Phenotypes From GWAS Catalog for ENSG00000228318 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228318 Gene

Localization for ENSG00000228318 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228318 Gene

Pathways & Interactions for ENSG00000228318 Gene

PathCards logo

SuperPathways for ENSG00000228318 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228318 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228318 Gene

Drugs & Compounds for ENSG00000228318 Gene

No Compound Related Data Available

Transcripts for ENSG00000228318 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228318 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000811DBD_9606 lncRNA 1116 3

Ensembl: ENST00000411427 (view in UCSC) ,

LNCipedia: lnc-TMPRSS2-1:2,

NONCODE: NONHSAT191512.1,

URS00004CDDAD_9606 lncRNA 555 1

LNCipedia: lnc-TMPRSS2-1:1,

URS00009B2632_9606 lncRNA 555 1

NONCODE: NONHSAT191513.1,

ENSG00000228318 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228318 Gene

No ASD Table

Relevant External Links for ENSG00000228318 Gene

GeneLoc Exon Structure for
ENSG00000228318

No data available for mRNA/cDNA for ENSG00000228318 Gene

Expression for ENSG00000228318 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228318 Gene

genes like me logo Genes that share expression patterns with ENSG00000228318: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228318 Gene

Orthologs for ENSG00000228318 Gene

Evolution for ENSG00000228318 Gene

ENSEMBL:
Gene Tree for ENSG00000228318 (if available)
TreeFam:
Gene Tree for ENSG00000228318 (if available)

No data available for Orthologs for ENSG00000228318 Gene

Paralogs for ENSG00000228318 Gene

No data available for Paralogs for ENSG00000228318 Gene

Variants for ENSG00000228318 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228318 Gene

Disorders for ENSG00000228318 Gene

Additional Disease Information for ENSG00000228318

No disorders were found for ENSG00000228318 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000228318 Gene

Publications for ENSG00000228318 Gene

No publications were found for ENSG00000228318 Gene.

No data available for Mastermind for ENSG00000228318 Gene

Products for ENSG00000228318 Gene

Sources for ENSG00000228318 Gene