Aliases for ENSG00000228280 Gene

Subcategory (RNA class) for ENSG00000228280 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000228280 Gene

  • Novel Transcript, Sense Intronic To C10orf11 5
  • NONHSAG006275.2 91
  • Lnc-VDAC2-1 165
  • AL731568.1 5

External Ids for ENSG00000228280 Gene

Previous GeneCards Identifiers for ENSG00000228280 Gene

  • GC10P077502

Summaries for ENSG00000228280 Gene

GeneCards Summary for ENSG00000228280 Gene

ENSG00000228280 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228280 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228280 Gene

Genomics for ENSG00000228280 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228280 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J075711 Enhancer 0.4 CraniofacialAtlas 608.2 -0.3 -312 0.6 POLR2A USF1 PKNOX1 ENSG00000228280 LOC105378367 HSALNG0078987 LRMDA
GH10J075592 Enhancer 1.5 UCNEbase Ensembl ENCODE CraniofacialAtlas 4.1 -119.2 -119234 2.4 CTCF PRDM10 ZNF629 ZNF692 ZIC2 POLR2A PATZ1 ZNF501 ELF4 ZNF600 ENSG00000286715 ZNF503 ZNF503-AS2 ENSG00000228280 5MWI_A-017 LRMDA
GH10J075708 Enhancer 1 UCNEbase Ensembl 4.7 -4.0 -3954 2.6 ZNF692 ZSCAN4 POLR2A ZNF561 ZBTB20 RAD21 KLF7 OSR2 ZBTB17 ZFP69B ENSG00000228280 HSALNG0078987 LOC105378367 LRMDA
GH10J075723 Enhancer 0.9 UCNEbase Ensembl ENCODE 4.9 +11.5 11546 2 POLR2A JUN PKNOX1 ZNF503 ZNF503-AS2 ENSG00000236842 LRMDA ENSG00000228280 LOC105378367 piR-54764-062
GH10J075565 Enhancer 0.7 Ensembl ENCODE 4.1 -146.5 -146454 1.2 FOXA1 IKZF2 DPF2 RELB NFE2 ARNT IKZF1 NR2F1 GATA3 JUND piR-45012-056 LRMDA ENSG00000228280 MN296987
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228280 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228280 Gene

Genomic Locations for ENSG00000228280 Gene
chr10:75,712,455-75,743,848
(GRCh38/hg38)
Size:
31,394 bases
Orientation:
Plus strand
chr10:77,502,498-77,503,513
(GRCh37/hg19)
Size:
1,016 bases
Orientation:
Plus strand

Genomic View for ENSG00000228280 Gene

Genes around ENSG00000228280 on UCSC Golden Path with GeneCards custom track
ENSG00000228280 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228280 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228280 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228280 Gene

Proteins for ENSG00000228280 Gene

Post-translational modifications for ENSG00000228280 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228280 Gene

Domains & Families for ENSG00000228280 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228280 Gene

Function for ENSG00000228280 Gene

Phenotypes From GWAS Catalog for ENSG00000228280 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228280 Gene

Localization for ENSG00000228280 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228280 Gene

Pathways & Interactions for ENSG00000228280 Gene

PathCards logo

SuperPathways for ENSG00000228280 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228280 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228280 Gene

Drugs & Compounds for ENSG00000228280 Gene

No Compound Related Data Available

Transcripts for ENSG00000228280 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228280 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000346E03_9606 lncRNA 434 3

Ensembl: ENST00000445111 (view in UCSC) ,

LNCipedia: lnc-VDAC2-1:13,

NONCODE: NONHSAT014117.2,

URS0000D5E384_9606 lncRNA 922 1

LNCipedia: lnc-VDAC2-1:12,

URS00009B5BF9_9606 lncRNA 434 1

NONCODE: NONHSAT155689.1,

ENSG00000228280 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228280 Gene

No ASD Table

Relevant External Links for ENSG00000228280 Gene

GeneLoc Exon Structure for
ENSG00000228280

No data available for mRNA/cDNA for ENSG00000228280 Gene

Expression for ENSG00000228280 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228280 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228280 Gene

This gene is overexpressed in Testis (x12.0).
genes like me logo Genes that share expression patterns with ENSG00000228280: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228280 Gene

Orthologs for ENSG00000228280 Gene

Evolution for ENSG00000228280 Gene

ENSEMBL:
Gene Tree for ENSG00000228280 (if available)
TreeFam:
Gene Tree for ENSG00000228280 (if available)

No data available for Orthologs for ENSG00000228280 Gene

Paralogs for ENSG00000228280 Gene

No data available for Paralogs for ENSG00000228280 Gene

Variants for ENSG00000228280 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228280 Gene

Disorders for ENSG00000228280 Gene

Additional Disease Information for ENSG00000228280

No disorders were found for ENSG00000228280 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000228280 Gene

Publications for ENSG00000228280 Gene

No publications were found for ENSG00000228280 Gene.

No data available for Mastermind for ENSG00000228280 Gene

Products for ENSG00000228280 Gene

Sources for ENSG00000228280 Gene