Aliases for ENSG00000228086 Gene

Subcategory (RNA class) for ENSG00000228086 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000228086 Gene

  • Novel Transcript 5
  • NONHSAG002219 92
  • AL589990.1 5
  • Lnc-DBT-3 168

External Ids for ENSG00000228086 Gene

Previous GeneCards Identifiers for ENSG00000228086 Gene

  • GC01M100927

Summaries for ENSG00000228086 Gene

GeneCards Summary for ENSG00000228086 Gene

ENSG00000228086 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228086 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228086 Gene

Genomics for ENSG00000228086 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228086 Gene

Promoters and enhancers for ENSG00000228086 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J100485 Enhancer 0.9 ENCODE 500.7 +0.0 17 0.2 FOXK2 ZNF217 NCOR1 KDM6A TCF7 FOXA1 ZBTB7A SKI SMARCC2 TEAD1 ENSG00000228086 lnc-DBT-6 CDC14A
GH01J100484 Enhancer 0.2 Ensembl 500.7 +1.1 1096 0.2 ENSG00000228086 VCAM1 lnc-DBT-6 CDC14A
GH01J100719 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10 -235.2 -235224 3.6 REST RELA POLR2A CTCF CEBPG NBN USF1 WRNIP1 IKZF1 TBP VCAM1 ENSG00000228086 GPR88 HSALNG0005548
GH01J100528 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10.9 -46.6 -46604 8.8 JUND RELA TOE1 RAD51 BCL11A TCF12 USF1 POLR2A NBN SPI1 SLC30A7 BRI3P1 MFSD14A ENSG00000235795 HNRNPA1P68 ENSG00000228086 TRMT13 CDC14A VCAM1 GPR88
GH01J100438 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.5 +45.5 45522 3.6 ZBTB11 TRIM28 MYC TOE1 CTBP1 TAF9B MXI1 OSR2 HDAC3 MBD2 CDC14A ENSG00000228086 GPR88 MFSD14A SLC35A3 lnc-GPR88-1 lnc-DBT-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228086 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228086 Gene

Genomic Locations for ENSG00000228086 Gene
chr1:100,462,399-100,485,997
(GRCh38/hg38)
Size:
23,599 bases
Orientation:
Minus strand
chr1:100,927,955-100,951,553
(GRCh37/hg19)
Size:
23,599 bases
Orientation:
Minus strand

Genomic View for ENSG00000228086 Gene

Genes around ENSG00000228086 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228086 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228086 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228086 Gene

Proteins for ENSG00000228086 Gene

Post-translational modifications for ENSG00000228086 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228086 Gene

Domains & Families for ENSG00000228086 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228086 Gene

Function for ENSG00000228086 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228086 Gene

Localization for ENSG00000228086 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228086 Gene

Pathways & Interactions for ENSG00000228086 Gene

PathCards logo

SuperPathways for ENSG00000228086 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000228086 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228086 Gene

Drugs & Compounds for ENSG00000228086 Gene

No Compound Related Data Available

Transcripts for ENSG00000228086 Gene

mRNA/cDNA for ENSG00000228086 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228086 Gene

No ASD Table

Relevant External Links for ENSG00000228086 Gene

GeneLoc Exon Structure for
ENSG00000228086

Expression for ENSG00000228086 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228086 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228086 Gene

This gene is overexpressed in Testis (x8.3).
genes like me logo Genes that share expression patterns with ENSG00000228086: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228086 Gene

Orthologs for ENSG00000228086 Gene

Evolution for ENSG00000228086 Gene

ENSEMBL:
Gene Tree for ENSG00000228086 (if available)
TreeFam:
Gene Tree for ENSG00000228086 (if available)

No data available for Orthologs for ENSG00000228086 Gene

Paralogs for ENSG00000228086 Gene

No data available for Paralogs for ENSG00000228086 Gene

Variants for ENSG00000228086 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228086 Gene

Disorders for ENSG00000228086 Gene

No disorders were found for ENSG00000228086 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228086 Gene

Publications for ENSG00000228086 Gene

No publications were found for ENSG00000228086 Gene.

No data available for Mastermind for ENSG00000228086 Gene

Products for ENSG00000228086 Gene

Sources for ENSG00000228086 Gene