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Aliases for ENSG00000228082 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000228082 Gene

  • Novel Transcript 5
  • Z86062.2 5

External Ids for ENSG00000228082 Gene

Previous GeneCards Identifiers for ENSG00000228082 Gene

  • GC06P100874

Summaries for ENSG00000228082 Gene

GeneCards Summary for ENSG00000228082 Gene

ENSG00000228082 is an RNA Gene. Diseases associated with ENSG00000228082 include Colorectal Cancer.

Additional gene information for ENSG00000228082 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000228082 Gene

Genomics for ENSG00000228082 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228082 Gene

Promoters and enhancers for ENSG00000228082 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J100425 Enhancer 0.4 Ensembl 600.7 -0.4 -417 2.2 CEBPB CEBPG ENSG00000228082 GC06P100411 LOC102724406 SIM1
GH06J100460 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 11.3 +36.3 36261 5.6 SP1 ZNF121 CTCF YY1 SP7 PRDM1 MZF1 GLIS2 PKNOX1 RNF2 SIM1 ASCC3 ENSG00000228082 ENSG00000219755 GC06P100411
GH06J100453 Enhancer 1.7 VISTA FANTOM5 Ensembl ENCODE dbSUPER 11.9 +27.6 27624 9.9 SP1 PKNOX1 RNF2 ZSCAN4 POLR2A EZH2 ATF2 BMI1 ZNF202 PRDM6 ASCC3 ENSG00000228082 ENSG00000219755 SIM1 GC06P100411
GH06J100295 Enhancer 1.1 Ensembl ENCODE 10.4 -128.5 -128506 5.7 ZNF121 ZSCAN21 SP7 MZF1 POLR2A ZNF600 PRDM10 ZEB2 ZNF639 ZNF629 PNISR ENSG00000228082 GC06M100387 ENSG00000216378
GH06J100175 Enhancer 1 Ensembl ENCODE 10.6 -250.2 -250202 2.6 CTCF SP1 MZF1 ZNF680 PRDM10 CEBPA REST PKNOX1 ZNF24 CEBPB ENSG00000216378 LOC100129854 ENSG00000228082 LOC105377911
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228082 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228082 Gene

Genomic Locations for ENSG00000228082 Gene
chr6:100,427,118-100,437,484
(GRCh38/hg38)
Size:
10,367 bases
Orientation:
Plus strand
chr6:100,874,994-100,885,360
(GRCh37/hg19)
Size:
10,367 bases
Orientation:
Plus strand

Genomic View for ENSG00000228082 Gene

Genes around ENSG00000228082 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228082 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228082 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228082 Gene

Proteins for ENSG00000228082 Gene

Post-translational modifications for ENSG00000228082 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228082 Gene

Domains & Families for ENSG00000228082 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000228082 Gene

Function for ENSG00000228082 Gene

Phenotypes From GWAS Catalog for ENSG00000228082 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228082 Gene

Localization for ENSG00000228082 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228082 Gene

Pathways & Interactions for ENSG00000228082 Gene

PathCards logo

SuperPathways for ENSG00000228082 Gene

No Data Available

Interacting Proteins for ENSG00000228082 Gene

Gene Ontology (GO) - Biological Process for ENSG00000228082 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000228082 Gene

Drugs & Compounds for ENSG00000228082 Gene

No Compound Related Data Available

Transcripts for ENSG00000228082 Gene

mRNA/cDNA for ENSG00000228082 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228082 Gene

No ASD Table

Relevant External Links for ENSG00000228082 Gene

GeneLoc Exon Structure for
ENSG00000228082

Expression for ENSG00000228082 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000228082 Gene

mRNA expression in normal human tissues for ENSG00000228082 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228082 Gene

This gene is overexpressed in Testis (x37.4) and Kidney - Cortex (x8.1).
genes like me logo Genes that share expression patterns with ENSG00000228082: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228082 Gene

Orthologs for ENSG00000228082 Gene

Evolution for ENSG00000228082 Gene

ENSEMBL:
Gene Tree for ENSG00000228082 (if available)
TreeFam:
Gene Tree for ENSG00000228082 (if available)

No data available for Orthologs for ENSG00000228082 Gene

Paralogs for ENSG00000228082 Gene

No data available for Paralogs for ENSG00000228082 Gene

Variants for ENSG00000228082 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228082 Gene

Disorders for ENSG00000228082 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000228082 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000228082: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228082 Gene

Publications for ENSG00000228082 Gene

No publications were found for ENSG00000228082 Gene.

No data available for External Links for ENSG00000228082 Gene

Products for ENSG00000228082 Gene

Sources for ENSG00000228082 Gene

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