Aliases for ENSG00000228082 Gene

Subcategory (RNA class) for ENSG00000228082 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000228082 Gene

  • Novel Transcript 5
  • NONHSAG044449.2 91
  • HSALNG0052231 164
  • Lnc-PRDM13-4 165
  • Z86062.2 5

External Ids for ENSG00000228082 Gene

Previous GeneCards Identifiers for ENSG00000228082 Gene

  • GC06P100874

Summaries for ENSG00000228082 Gene

GeneCards Summary for ENSG00000228082 Gene

ENSG00000228082 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000228082 include Colorectal Cancer.

Additional gene information for ENSG00000228082 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228082 Gene

Genomics for ENSG00000228082 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000228082 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J100460 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 11.2 +69.9 69909 5.4 BRCA1 RNF2 SP1 CTCF PRDM10 ZNF692 PRDM1 ZIC2 PKNOX1 POLR2A lnc-ASCC3-3 SIM1 ASCC3 ENSG00000228082 RPS3P5 lnc-ASCC3-4 MCHR2
GH06J100453 Enhancer 1.3 VISTA FANTOM5 ENCODE dbSUPER 11.5 +63.0 62964 6.4 RNF2 POLR2A EZH2 CBX2 BMI1 CBX8 ZNF202 PRDM6 SMARCA4 SP1 ASCC3 ENSG00000228082 RPS3P5 SIM1 lnc-ASCC3-3 lnc-ASCC3-4 MCHR2
GH06J100342 Enhancer 1.1 UCNEbase Ensembl ENCODE 11.1 -47.9 -47879 6.7 CREB1 ZNF10 FOS GABPA CEBPG BHLHE40 JUND CEBPB NFIL3 JUN ENSG00000228082 piR-33432-450 RF00017-5689 SIM1 MCHR2
GH06J100295 Enhancer 1 Ensembl ENCODE 10.5 -94.6 -94643 6.6 PRDM10 ZNF629 ZNF692 POLR2A PATZ1 REST ZNF501 ZNF600 SOX6 SOX13 PNISR ENSG00000228082 RF00017-5689 HSALNG0052223 SIM1 MCHR2
GH06J100175 Enhancer 0.9 Ensembl ENCODE 10.6 -216.6 -216643 3 CTCF PRDM10 FOXA1 PKNOX1 REST ZNF24 CEBPA SCRT2 ZBTB44 MGA ENSG00000216378 LOC100129854 lnc-PRDM13-9 ENSG00000228082 LOC105377911 MCHR2 SIM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228082 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000228082 Gene

Genomic Locations for ENSG00000228082 Gene
chr6:100,393,544-100,437,485
(GRCh38/hg38)
Size:
43,942 bases
Orientation:
Plus strand
chr6:100,874,994-100,885,360
(GRCh37/hg19)
Size:
10,367 bases
Orientation:
Plus strand

Genomic View for ENSG00000228082 Gene

Genes around ENSG00000228082 on UCSC Golden Path with GeneCards custom track
ENSG00000228082 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000228082 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228082 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228082 Gene

Proteins for ENSG00000228082 Gene

Post-translational modifications for ENSG00000228082 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228082 Gene

Domains & Families for ENSG00000228082 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228082 Gene

Function for ENSG00000228082 Gene

Phenotypes From GWAS Catalog for ENSG00000228082 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228082 Gene

Localization for ENSG00000228082 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228082 Gene

Pathways & Interactions for ENSG00000228082 Gene

PathCards logo

SuperPathways for ENSG00000228082 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000228082 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228082 Gene

Drugs & Compounds for ENSG00000228082 Gene

No Compound Related Data Available

Transcripts for ENSG00000228082 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000228082 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000034F3F7_9606 lncRNA 380 4

Ensembl: ENST00000411442 (view in UCSC) ,

LncBook: HSALNT0110559,

LNCipedia: lnc-PRDM13-4:1,

NONCODE: NONHSAT114155.2,

URS00008C2C2F_9606 lncRNA 969 2

LncBook: HSALNT0110557,

NONCODE: NONHSAT114154.2,

URS00009C11A6_9606 lncRNA 380 2

LncBook: HSALNT0110560,

NONCODE: NONHSAT207739.1,

ENSG00000228082 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228082 Gene

No ASD Table

Relevant External Links for ENSG00000228082 Gene

GeneLoc Exon Structure for
ENSG00000228082

No data available for mRNA/cDNA for ENSG00000228082 Gene

Expression for ENSG00000228082 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228082 Gene

mRNA expression in normal human tissues for ENSG00000228082 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000228082 Gene

This gene is overexpressed in Testis (x37.4) and Kidney - Cortex (x8.1).
genes like me logo Genes that share expression patterns with ENSG00000228082: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228082 Gene

Orthologs for ENSG00000228082 Gene

Evolution for ENSG00000228082 Gene

ENSEMBL:
Gene Tree for ENSG00000228082 (if available)
TreeFam:
Gene Tree for ENSG00000228082 (if available)

No data available for Orthologs for ENSG00000228082 Gene

Paralogs for ENSG00000228082 Gene

No data available for Paralogs for ENSG00000228082 Gene

Variants for ENSG00000228082 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228082 Gene

Disorders for ENSG00000228082 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000228082 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000228082: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228082 Gene

Publications for ENSG00000228082 Gene

No publications were found for ENSG00000228082 Gene.

No data available for Mastermind for ENSG00000228082 Gene

Products for ENSG00000228082 Gene

Sources for ENSG00000228082 Gene