Aliases for ENSG00000228073 Gene

Subcategory (RNA class) for ENSG00000228073 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000228073 Gene

  • Novel Transcript 5
  • NONHSAG030075 92
  • HSALNG0021035 167
  • Lnc-COL3A1-1 168
  • AC133106.1 5

External Ids for ENSG00000228073 Gene

Previous GeneCards Identifiers for ENSG00000228073 Gene

  • GC02P189959

Summaries for ENSG00000228073 Gene

GeneCards Summary for ENSG00000228073 Gene

ENSG00000228073 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000228073 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000228073 Gene

Genomics for ENSG00000228073 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000228073 Gene

Promoters and enhancers for ENSG00000228073 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J189090 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 500.7 -0.3 -302 8.7 CTCF TCF12 JUND RAD21 EP300 TRIM22 SMC3 MAFF FOSL2 MAFK ENSG00000228073 COL5A2 WDR75 COL3A1 lnc-DIRC1-3
GH02J189118 Enhancer 0.3 Ensembl dbSUPER 13.1 +23.7 23738 1.2 ENSG00000228073 COL5A2 WDR75 MIR3129
GH02J189109 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +14.9 14869 0.3 EP300 TRIM22 BCL11A ARNT MEF2B NBN JUND IKZF1 BMI1 NR2F1 ENSG00000228073 MIR3129 COL5A2
GH02J189110 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +15.2 15205 0.3 EP300 TGIF2 ZBTB7A TRIM22 TEAD1 BCL11A CTCF ARNT MEF2B NBN ENSG00000228073 MIR3129 COL5A2
GH02J189085 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 -8.3 -8262 2 JUND POLR2A CEBPB COL5A2 ENSG00000228073 lnc-DIRC1-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000228073 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000228073 Gene

Genomic Locations for ENSG00000228073 Gene
chr2:189,095,063-189,096,158
(GRCh38/hg38)
Size:
1,096 bases
Orientation:
Plus strand
chr2:189,959,789-189,960,884
(GRCh37/hg19)
Size:
1,096 bases
Orientation:
Plus strand

Genomic View for ENSG00000228073 Gene

Genes around ENSG00000228073 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000228073 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000228073 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000228073 Gene

Proteins for ENSG00000228073 Gene

Post-translational modifications for ENSG00000228073 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000228073 Gene

Domains & Families for ENSG00000228073 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000228073 Gene

Function for ENSG00000228073 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000228073 Gene

Localization for ENSG00000228073 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000228073 Gene

Pathways & Interactions for ENSG00000228073 Gene

PathCards logo

SuperPathways for ENSG00000228073 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000228073 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000228073 Gene

Drugs & Compounds for ENSG00000228073 Gene

No Compound Related Data Available

Transcripts for ENSG00000228073 Gene

mRNA/cDNA for ENSG00000228073 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000228073 Gene

No ASD Table

Relevant External Links for ENSG00000228073 Gene

GeneLoc Exon Structure for
ENSG00000228073

Expression for ENSG00000228073 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000228073 Gene

genes like me logo Genes that share expression patterns with ENSG00000228073: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000228073 Gene

Orthologs for ENSG00000228073 Gene

Evolution for ENSG00000228073 Gene

ENSEMBL:
Gene Tree for ENSG00000228073 (if available)
TreeFam:
Gene Tree for ENSG00000228073 (if available)

No data available for Orthologs for ENSG00000228073 Gene

Paralogs for ENSG00000228073 Gene

No data available for Paralogs for ENSG00000228073 Gene

Variants for ENSG00000228073 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000228073 Gene

Disorders for ENSG00000228073 Gene

No disorders were found for ENSG00000228073 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000228073 Gene

Publications for ENSG00000228073 Gene

No publications were found for ENSG00000228073 Gene.

No data available for Mastermind for ENSG00000228073 Gene

Products for ENSG00000228073 Gene

Sources for ENSG00000228073 Gene