Aliases for ENSG00000227960 Gene

Subcategory (RNA class) for ENSG00000227960 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000227960 Gene

  • Novel Transcript 5
  • HSALNG0004710 169
  • NONHSAG001911 94
  • Lnc-PRKACB-4 170
  • AL138799.2 5

External Ids for ENSG00000227960 Gene

Previous GeneCards Identifiers for ENSG00000227960 Gene

  • GC01P081970

Summaries for ENSG00000227960 Gene

GeneCards Summary for ENSG00000227960 Gene

ENSG00000227960 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227960 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227960 Gene

Genomics for ENSG00000227960 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227960 Gene

Promoters and enhancers for ENSG00000227960 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J081507 Enhancer 0.5 Ensembl 750.6 +1.1 1123 0.8 IKZF2 PKNOX1 ZNF239 ELF1 BCL11A RUNX3 IRF4 ATF2 ENSG00000227960 LOC101927434 MED28P8 ADGRL2 lnc-ADGRL2-4
GH01J081505 Enhancer 0.4 Ensembl 750.6 +0.4 402 0.6 IKZF2 ZFHX2 ATF2 ENSG00000227960 LOC646555 LOC101927434 MED28P8 lnc-ADGRL2-4 ADGRL2
GH01J081124 Enhancer 0.9 Ensembl 14.6 -379.1 -379099 2.8 ZNF785 CTBP1 ZNF133 ZNF362 ZNF701 ZNF121 ZNF280D BCL6B ZNF473 SP7 ENSG00000235089 ENSG00000227960 LOC101927434 RPL7P10 LOC105378813
GH01J081509 Enhancer 0.5 Ensembl ENCODE CraniofacialAtlas 0.6 +4.4 4402 2.2 ENSG00000227960 LOC101927434 MED28P8 ADGRL2 lnc-ADGRL2-4
GH01J081546 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +44.3 44302 6 FOXK2 CTCF TCF7L2 JUND RAD21 POU5F1 PRDM1 CREM ZBED1 IKZF1 LOC101927434 MED28P8 ENSG00000227960 ADGRL2 lnc-ADGRL2-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227960 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227960 Gene

Genomic Locations for ENSG00000227960 Gene
chr1:81,505,099-81,506,296
(GRCh38/hg38)
Size:
1,198 bases
Orientation:
Plus strand
chr1:81,970,784-81,971,981
(GRCh37/hg19)
Size:
1,198 bases
Orientation:
Plus strand

Genomic View for ENSG00000227960 Gene

Genes around ENSG00000227960 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227960 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227960 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227960 Gene

Proteins for ENSG00000227960 Gene

Post-translational modifications for ENSG00000227960 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227960 Gene

Domains & Families for ENSG00000227960 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227960 Gene

Function for ENSG00000227960 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227960 Gene

Localization for ENSG00000227960 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227960 Gene

Pathways & Interactions for ENSG00000227960 Gene

PathCards logo

SuperPathways for ENSG00000227960 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227960 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227960 Gene

Drugs & Compounds for ENSG00000227960 Gene

No Compound Related Data Available

Transcripts for ENSG00000227960 Gene

mRNA/cDNA for ENSG00000227960 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) NONCODE transcripts :
(2) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227960 Gene

No ASD Table

Relevant External Links for ENSG00000227960 Gene

GeneLoc Exon Structure for
ENSG00000227960

Expression for ENSG00000227960 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227960 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227960 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with ENSG00000227960: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227960 Gene

Orthologs for ENSG00000227960 Gene

Evolution for ENSG00000227960 Gene

ENSEMBL:
Gene Tree for ENSG00000227960 (if available)
TreeFam:
Gene Tree for ENSG00000227960 (if available)

No data available for Orthologs for ENSG00000227960 Gene

Paralogs for ENSG00000227960 Gene

No data available for Paralogs for ENSG00000227960 Gene

Variants for ENSG00000227960 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227960 Gene

Disorders for ENSG00000227960 Gene

No disorders were found for ENSG00000227960 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227960 Gene

Publications for ENSG00000227960 Gene

No publications were found for ENSG00000227960 Gene.

No data available for External Links for ENSG00000227960 Gene

Products for ENSG00000227960 Gene

Sources for ENSG00000227960 Gene