Aliases for ENSG00000227678 Gene

Subcategory (RNA class) for ENSG00000227678 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000227678 Gene

  • Novel Transcript, Antisense To L3MBTL3 5
  • HSALNG0053446 167
  • NONHSAG044825 92
  • Lnc-SAMD3-1 168
  • AL355581.1 5

External Ids for ENSG00000227678 Gene

Previous GeneCards Identifiers for ENSG00000227678 Gene

  • GC06M130454

Summaries for ENSG00000227678 Gene

GeneCards Summary for ENSG00000227678 Gene

ENSG00000227678 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227678 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227678 Gene

Genomics for ENSG00000227678 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227678 Gene

Promoters and enhancers for ENSG00000227678 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J130178 Enhancer 0.8 Ensembl ENCODE 19 -32.7 -32712 1 JUND FOS JUN FOSL1 FOSL2 ATF3 DPF2 TEAD3 SMARCE1 KDM1A ENSG00000227678 piR-55036-088 piR-41405-058 SAMD3
GH06J130114 Enhancer 0.8 Ensembl ENCODE 11.4 +30.4 30380 2 RELA MEF2C TRIM22 ZNF384 ARNT MEF2B NBN NR2C1 EBF1 IKZF1 ENSG00000227678 L3MBTL3 LOC105378000 RF00017-5774
GH06J130182 Enhancer 0.7 ENCODE dbSUPER 11.1 -37.9 -37857 2.5 NONO PCBP1 ZNF282 MCM7 IRF1 FOXP1 ZNF366 HNRNPK CEBPB MCM2 piR-41405-058 ENSG00000227678 SAMD3 piR-55036-088
GH06J130106 Enhancer 0.6 Ensembl 10.8 +39.1 39078 1.8 SPI1 REST TBX21 YY1 NFIC DACH1 IKZF1 MCM7 SRF BCLAF1 ENSG00000227678 LOC105378000 RF00017-5774 L3MBTL3
GH06J130219 Enhancer 0.4 Ensembl dbSUPER 10.6 -73.2 -73222 0.8 MAFK ENSG00000227678 SAMD3 piR-32559-398 piR-43536-018
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227678 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227678 Gene

Genomic Locations for ENSG00000227678 Gene
chr6:130,133,410-130,146,179
(GRCh38/hg38)
Size:
12,770 bases
Orientation:
Minus strand
chr6:130,454,555-130,465,515
(GRCh37/hg19)
Size:
10,961 bases
Orientation:
Minus strand

Genomic View for ENSG00000227678 Gene

Genes around ENSG00000227678 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227678 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227678 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227678 Gene

Proteins for ENSG00000227678 Gene

Post-translational modifications for ENSG00000227678 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227678 Gene

Domains & Families for ENSG00000227678 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227678 Gene

Function for ENSG00000227678 Gene

Phenotypes From GWAS Catalog for ENSG00000227678 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227678 Gene

Localization for ENSG00000227678 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227678 Gene

Pathways & Interactions for ENSG00000227678 Gene

PathCards logo

SuperPathways for ENSG00000227678 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000227678 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000227678 Gene

Drugs & Compounds for ENSG00000227678 Gene

No Compound Related Data Available

Transcripts for ENSG00000227678 Gene

mRNA/cDNA for ENSG00000227678 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227678 Gene

No ASD Table

Relevant External Links for ENSG00000227678 Gene

GeneLoc Exon Structure for
ENSG00000227678

Expression for ENSG00000227678 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000227678 Gene

genes like me logo Genes that share expression patterns with ENSG00000227678: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227678 Gene

Orthologs for ENSG00000227678 Gene

Evolution for ENSG00000227678 Gene

ENSEMBL:
Gene Tree for ENSG00000227678 (if available)
TreeFam:
Gene Tree for ENSG00000227678 (if available)

No data available for Orthologs for ENSG00000227678 Gene

Paralogs for ENSG00000227678 Gene

No data available for Paralogs for ENSG00000227678 Gene

Variants for ENSG00000227678 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227678 Gene

Disorders for ENSG00000227678 Gene

No disorders were found for ENSG00000227678 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227678 Gene

Publications for ENSG00000227678 Gene

No publications were found for ENSG00000227678 Gene.

No data available for Mastermind for ENSG00000227678 Gene

Products for ENSG00000227678 Gene

Sources for ENSG00000227678 Gene