Aliases for ENSG00000227627 Gene

Subcategory (RNA class) for ENSG00000227627 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000227627 Gene

  • Novel Transcript 5
  • HSALNG0054418 169
  • NONHSAG045179 94
  • AL080276.2 5
  • Lnc-VIP-1 170

External Ids for ENSG00000227627 Gene

Previous GeneCards Identifiers for ENSG00000227627 Gene

  • GC06P153304

Summaries for ENSG00000227627 Gene

GeneCards Summary for ENSG00000227627 Gene

ENSG00000227627 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227627 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227627 Gene

Genomics for ENSG00000227627 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227627 Gene

Promoters and enhancers for ENSG00000227627 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J152978 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -0.9 -871 6.9 SIN3A SP1 ZBTB40 RBPJ SMARCE1 POLR2A HDAC2 ATF1 FOS CREB1 FBXO5 ENSG00000227627 piR-40310 MTRF1L LINC02840 ENSG00000237312 MTATP6P31 MTCO2P31 MTCO3P31 MTND4P13
GH06J152975 Promoter/Enhancer 0.9 Ensembl ENCODE 0.4 -8.0 -8041 0.6 HLF SP1 CEBPG PRDM10 PKNOX1 SCRT2 ATF3 GABPA FOXK2 ATF7 lnc-MTRF1L-3 MTRF1L ENSG00000227627 FBXO5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227627 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227627 Gene

Genomic Locations for ENSG00000227627 Gene
chr6:152,983,331-152,991,322
(GRCh38/hg38)
Size:
7,992 bases
Orientation:
Plus strand
chr6:153,304,885-153,310,358
(GRCh37/hg19)
Size:
5,474 bases
Orientation:
Plus strand

Genomic View for ENSG00000227627 Gene

Genes around ENSG00000227627 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227627 Gene

Proteins for ENSG00000227627 Gene

Post-translational modifications for ENSG00000227627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227627 Gene

Domains & Families for ENSG00000227627 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227627 Gene

Function for ENSG00000227627 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227627 Gene

Localization for ENSG00000227627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227627 Gene

Pathways & Interactions for ENSG00000227627 Gene

PathCards logo

SuperPathways for ENSG00000227627 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227627 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227627 Gene

Drugs & Compounds for ENSG00000227627 Gene

No Compound Related Data Available

Transcripts for ENSG00000227627 Gene

mRNA/cDNA for ENSG00000227627 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(3) NONCODE transcripts :
(2) LncBook transcripts :
(8) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227627 Gene

No ASD Table

Relevant External Links for ENSG00000227627 Gene

GeneLoc Exon Structure for
ENSG00000227627

Expression for ENSG00000227627 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227627 Gene

genes like me logo Genes that share expression patterns with ENSG00000227627: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227627 Gene

Orthologs for ENSG00000227627 Gene

Evolution for ENSG00000227627 Gene

ENSEMBL:
Gene Tree for ENSG00000227627 (if available)
TreeFam:
Gene Tree for ENSG00000227627 (if available)

No data available for Orthologs for ENSG00000227627 Gene

Paralogs for ENSG00000227627 Gene

No data available for Paralogs for ENSG00000227627 Gene

Variants for ENSG00000227627 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227627 Gene

Disorders for ENSG00000227627 Gene

No disorders were found for ENSG00000227627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227627 Gene

Publications for ENSG00000227627 Gene

No publications were found for ENSG00000227627 Gene.

No data available for External Links for ENSG00000227627 Gene

Products for ENSG00000227627 Gene

Sources for ENSG00000227627 Gene