Aliases for ENSG00000227531 Gene

Subcategory (RNA class) for ENSG00000227531 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000227531 Gene

  • Novel Transcript 5
  • NONHSAG053193.2 91
  • HSALNG0073676 164
  • Lnc-OR2K2-1 165
  • AL162414.1 5

External Ids for ENSG00000227531 Gene

Previous GeneCards Identifiers for ENSG00000227531 Gene

  • GC09M113902
  • GC09M111142

Summaries for ENSG00000227531 Gene

GeneCards Summary for ENSG00000227531 Gene

ENSG00000227531 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227531 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227531 Gene

Genomics for ENSG00000227531 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000227531 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J111282 Enhancer 0.5 Ensembl 606.8 +0.8 794 3.8 TCF12 IKZF2 RELB IKZF1 ETV6 ENSG00000227531 LOC105376219 LPAR1 OR2K2 MUSK GNG10 PTGR1 MIR7702
GH09J112027 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -755.4 -755388 24.8 CEBPG SP1 CREB1 GATAD2A ATF7 TEAD4 REST TFE3 POLR2A ZHX2 ENSG00000259953 LOC105376220 RNU6-710P RNU6-1013P DNAJC25 ENSG00000227531 UGCG GNG10 PTGR1 HSALNG0073743
GH09J111286 Enhancer 0.7 Ensembl ENCODE 6.7 -3.1 -3130 2.4 TEAD4 IKZF2 EED DPF2 NBN IKZF1 JUNB BATF JUND TBX21 LPAR1 OR2K2 ENSG00000227531 PTGR1 LOC105376219
GH09J111232 Enhancer 0.6 Ensembl ENCODE 0.2 +51.6 51597 2.6 CREB1 SCRT2 SCRT1 ZNF513 KLF1 PTGR1 LPAR1 ZNF483 GNG10 piR-38351-498 lnc-ZNF483-4 ENSG00000227531 LOC105376219 OR2K2
GH09J111178 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.1 +105.8 105794 1.8 PRDM10 ZSCAN4 IKZF2 EED CEBPB RUNX3 ATF2 NBN IKZF1 ZNF335 LPAR1 piR-38352-580 piR-38351-498 ENSG00000227531 LOC105376219 OR2K2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227531 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000227531 Gene

Genomic Locations for ENSG00000227531 Gene
chr9:111,113,326-111,284,895
(GRCh38/hg38)
Size:
171,570 bases
Orientation:
Minus strand
chr9:113,901,526-114,047,116
(GRCh37/hg19)
Size:
145,591 bases
Orientation:
Minus strand

Genomic View for ENSG00000227531 Gene

Genes around ENSG00000227531 on UCSC Golden Path with GeneCards custom track
ENSG00000227531 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000227531 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227531 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227531 Gene

Proteins for ENSG00000227531 Gene

Post-translational modifications for ENSG00000227531 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227531 Gene

Domains & Families for ENSG00000227531 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227531 Gene

Function for ENSG00000227531 Gene

Phenotypes From GWAS Catalog for ENSG00000227531 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227531 Gene

Localization for ENSG00000227531 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227531 Gene

Pathways & Interactions for ENSG00000227531 Gene

PathCards logo

SuperPathways for ENSG00000227531 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227531 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000227531 Gene

Drugs & Compounds for ENSG00000227531 Gene

No Compound Related Data Available

Transcripts for ENSG00000227531 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000227531 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003C5070_9606 lncRNA 744 3

Ensembl: ENST00000426204 (view in UCSC) ,

LNCipedia: lnc-OR2K2-1:1,

NONCODE: NONHSAT133974.2,

URS00008BA654_9606 lncRNA 686 3

LncBook: HSALNT0153988,

LNCipedia: lnc-OR2K2-1:2,

NONCODE: NONHSAT133975.2,

URS0000D5E115_9606 lncRNA 1265 2

LncBook: HSALNT0153980,

LNCipedia: lnc-OR2K2-1:7,

URS00009B1738_9606 lncRNA 744 2

LncBook: HSALNT0153977,

NONCODE: NONHSAT221175.1,

URS0000D5D751_9606 lncRNA 1739 1

LNCipedia: lnc-OR2K2-1:5,

ENSG00000227531 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227531 Gene

No ASD Table

Relevant External Links for ENSG00000227531 Gene

GeneLoc Exon Structure for
ENSG00000227531

No data available for mRNA/cDNA for ENSG00000227531 Gene

Expression for ENSG00000227531 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000227531 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227531 Gene

This gene is overexpressed in Testis (x12.7).
genes like me logo Genes that share expression patterns with ENSG00000227531: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227531 Gene

Orthologs for ENSG00000227531 Gene

Evolution for ENSG00000227531 Gene

ENSEMBL:
Gene Tree for ENSG00000227531 (if available)
TreeFam:
Gene Tree for ENSG00000227531 (if available)

No data available for Orthologs for ENSG00000227531 Gene

Paralogs for ENSG00000227531 Gene

No data available for Paralogs for ENSG00000227531 Gene

Variants for ENSG00000227531 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227531 Gene

Disorders for ENSG00000227531 Gene

Additional Disease Information for ENSG00000227531

No disorders were found for ENSG00000227531 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000227531 Gene

Publications for ENSG00000227531 Gene

No publications were found for ENSG00000227531 Gene.

No data available for Mastermind for ENSG00000227531 Gene

Products for ENSG00000227531 Gene

Sources for ENSG00000227531 Gene