Aliases for ENSG00000227527 Gene

Subcategory (RNA class) for ENSG00000227527 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000227527 Gene

  • Novel Transcript 5
  • NONHSAG001204 92
  • HSALNG0002990 167
  • Lnc-FOXJ3-1 168
  • AC096540.1 5

External Ids for ENSG00000227527 Gene

Previous GeneCards Identifiers for ENSG00000227527 Gene

  • GC01M042801

Summaries for ENSG00000227527 Gene

GeneCards Summary for ENSG00000227527 Gene

ENSG00000227527 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227527 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227527 Gene

Genomics for ENSG00000227527 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227527 Gene

Promoters and enhancers for ENSG00000227527 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J042338 Enhancer 0.3 Ensembl 500.7 -0.5 -525 0.2 GATA3 ENSG00000227527 P3H1 GUCA2B ENSG00000236180 RNU6-536P CCDC30 PPIH YBX1 ZMYND12 lnc-RIMKLA-1
GH01J042164 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 10.1 +172.0 171975 5.2 ZNF217 TCF12 ZNF300 ZNF354C ZIC2 ZBTB10 ZNF423 KLF4 KLF7 ZNF662 GUCA2A PPIH FOXJ3 CCDC30 P3H1 ZNF691 SCMH1 ENSG00000227527 piR-48553-003
GH01J042333 Promoter/Enhancer 1.8 EPDnew ENCODE CraniofacialAtlas 0.7 +2.9 2910 4.5 RXRA EP300 FOXK2 HNRNPK ZBTB40 ZNF217 ZSCAN5C NRF1 TCF12 MYC FOXJ3 lnc-RIMKLA-1 CCDC30 PPIH CLDN19 GUCA2B RNU6-536P ENSG00000236180 ENSG00000228452 YBX1
GH01J042339 Enhancer 1 Ensembl ENCODE 0.7 -2.0 -2031 2.1 ZNF217 EP300 ZSCAN5C TCF12 KDM6A TCF7 FOXA1 SKI TBX3 ZKSCAN8 ZMYND12 P3H1 RNU6-536P ENSG00000236180 PPCS GUCA2B PPIH YBX1 CCDC30 ENSG00000227527
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227527 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227527 Gene

Genomic Locations for ENSG00000227527 Gene
chr1:42,335,386-42,338,376
(GRCh38/hg38)
Size:
2,991 bases
Orientation:
Minus strand
chr1:42,801,057-42,804,047
(GRCh37/hg19)
Size:
2,991 bases
Orientation:
Minus strand

Genomic View for ENSG00000227527 Gene

Genes around ENSG00000227527 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227527 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227527 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227527 Gene

Proteins for ENSG00000227527 Gene

Post-translational modifications for ENSG00000227527 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227527 Gene

Domains & Families for ENSG00000227527 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227527 Gene

Function for ENSG00000227527 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227527 Gene

Localization for ENSG00000227527 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227527 Gene

Pathways & Interactions for ENSG00000227527 Gene

PathCards logo

SuperPathways for ENSG00000227527 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000227527 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000227527 Gene

Drugs & Compounds for ENSG00000227527 Gene

No Compound Related Data Available

Transcripts for ENSG00000227527 Gene

mRNA/cDNA for ENSG00000227527 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227527 Gene

No ASD Table

Relevant External Links for ENSG00000227527 Gene

GeneLoc Exon Structure for
ENSG00000227527

Expression for ENSG00000227527 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000227527 Gene

genes like me logo Genes that share expression patterns with ENSG00000227527: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227527 Gene

Orthologs for ENSG00000227527 Gene

Evolution for ENSG00000227527 Gene

ENSEMBL:
Gene Tree for ENSG00000227527 (if available)
TreeFam:
Gene Tree for ENSG00000227527 (if available)

No data available for Orthologs for ENSG00000227527 Gene

Paralogs for ENSG00000227527 Gene

No data available for Paralogs for ENSG00000227527 Gene

Variants for ENSG00000227527 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227527 Gene

Disorders for ENSG00000227527 Gene

No disorders were found for ENSG00000227527 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227527 Gene

Publications for ENSG00000227527 Gene

No publications were found for ENSG00000227527 Gene.

No data available for Mastermind for ENSG00000227527 Gene

Products for ENSG00000227527 Gene

Sources for ENSG00000227527 Gene