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Aliases for ENSG00000227459 Gene
Data sources for ENSG00000227459 Gene:
Subcategory (RNA class) for ENSG00000227459 Gene
lncRNA
Aliases for ENSG00000227459 Gene
External Ids for ENSG00000227459 Gene
- Ensembl: ENSG00000227459
Previous GeneCards Identifiers for ENSG00000227459 Gene
- GC02P240547
Summaries for ENSG00000227459 Gene
GeneCards Summary for ENSG00000227459 Gene
ENSG00000227459 is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for ENSG00000227459 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227459 Gene
Genomics for ENSG00000227459 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ENSG00000227459 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J239622 | Promoter/Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 250.7 | -0.5 | -548 | 5.3 | CEBPB ZBTB40 CREB1 | ENSG00000227459 LOC401040 HSALNG0023521 NDUFA10 | |
| GH02J239601 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 0.3 | -20.3 | -20297 | 9.2 | ZNF623 MAFF SPI1 MAX EZH2 CEBPB MAFK CEBPG | LOC401040 HSALNG0023521 ENSG00000227459 NDUFA10 | |
| GH02J239629 | Enhancer | 0.6 | ENCODE dbSUPER | 0.4 | +5.1 | 5123 | 1.7 | BRCA1 CEBPB EP300 RAD21 SMC3 | HDAC4 HDAC4-AS1 ENSG00000227459 KR153194-102 LOC401040 NDUFA10 | |
| GH02J239599 | Enhancer | 0.5 | Ensembl dbSUPER | 0.3 | -25.8 | -25796 | 0.2 | ZIC2 ZNF24 | LOC401040 HSALNG0023521 ENSG00000227459 NDUFA10 | |
| GH02J239619 | Enhancer | 0.3 | Ensembl dbSUPER | 0.4 | -6.0 | -5996 | 0.2 | ENSG00000227459 HSALNG0023521 LOC401040 NDUFA10 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ENSG00000227459 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for ENSG00000227459 Gene
Latest Assembly
- chr2:239,625,697-239,630,840
- (GRCh38/hg38)
- Size:
- 5,144 bases
- Orientation:
- Plus strand
Previous Assembly
- chr2:240,547,392-240,552,533
- (GRCh37/hg19 by Ensembl)
- Size:
- 5,142 bases
- Orientation:
- Plus strand
Genomic View for ENSG00000227459 Gene
Genes around ENSG00000227459 on UCSC Golden Path with GeneCards custom track
ENSG00000227459 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q37.3 by Ensembl
ENSG00000227459 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000227459 Gene
Proteins for ENSG00000227459 Gene
Post-translational modifications for ENSG00000227459 Gene
No Post-translational modifications
No data available for DME Specific Peptides for ENSG00000227459 Gene
Domains & Families for ENSG00000227459 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227459 Gene
Function for ENSG00000227459 Gene
Phenotypes From GWAS Catalog for ENSG00000227459 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227459 Gene
Localization for ENSG00000227459 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227459 Gene
Transcripts for ENSG00000227459 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000227459 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000580ADB_9606 | lncRNA | 350 | 3 |
Ensembl: ENST00000446029 (view in UCSC) , LNCipedia: lnc-TWIST2-6:1, NONCODE: NONHSAT077803.2, |
| URS00009C3FE1_9606 | lncRNA | 348 | 2 |
LncBook: HSALNT0049666, NONCODE: NONHSAT183913.1, |
ENSG00000227459 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for ENSG00000227459 Gene
- GeneLoc Exon Structure for
- ENSG00000227459
No data available for mRNA/cDNA for ENSG00000227459 Gene
Expression for ENSG00000227459 Gene
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227459 Gene
Orthologs for ENSG00000227459 Gene
No data available for Orthologs for ENSG00000227459 Gene
Paralogs for ENSG00000227459 Gene
No data available for Paralogs for ENSG00000227459 Gene
Variants for ENSG00000227459 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227459 Gene
Disorders for ENSG00000227459 Gene
No disorders were found for ENSG00000227459 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227459 Gene
Publications for ENSG00000227459 Gene
No publications were found for ENSG00000227459 Gene.
No data available for Mastermind for ENSG00000227459 Gene
Products for ENSG00000227459 Gene
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- Browse OriGene Inhibitory RNA Products For ENSG00000227459
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- Browse CRISPR knockouts for ENSG00000227459
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- Lentiviral ORF Clones
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Sources for ENSG00000227459 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB