Aliases for ENSG00000227407 Gene

Data sources for ENSG00000227407 Gene:

RNA type for ENSG00000227407 Gene

lncRNA

Aliases for ENSG00000227407 Gene

External Ids for ENSG00000227407 Gene

Previous GeneCards Identifiers for ENSG00000227407 Gene

  • GC19M054941

Summaries for ENSG00000227407 Gene

GeneCards Summary for ENSG00000227407 Gene

ENSG00000227407 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227407 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227407 Gene

Genomics for ENSG00000227407 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000227407 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J054435 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.4 -1404 1.8 POLR2A RBM22 KDM1A RBFOX2 ENSG00000227407 ENSG00000268496 HSALNG0127528 HSALNG0127529 TTYH1 ENSG00000267838 LENG8
GH19J054436 Enhancer 0.7 CraniofacialAtlas dbSUPER 250.7 -0.1 -122 0.4 ZSCAN16 ZBTB33 NFIB POLR2A PAF1 ZNF687 MNT CREB1 ENSG00000227407 ENSG00000268496 HSALNG0127528 ENSG00000267838 LENG8 TTYH1
GH19J054434 Enhancer 0.3 dbSUPER 250.7 +0.4 378 0.2 POLR2A ENSG00000227407 ENSG00000268496 HSALNG0127528 LENG8 TTYH1
GH19J054351 Enhancer 1 Ensembl ENCODE dbSUPER 11.9 +81.8 81799 4.2 CTCF RAD21 SMC3 PTBP1 BHLHE40 SPI1 PKNOX1 POLR2A NFATC1 TCF12 NONHSAG026514.2 NONHSAG026515.2 TTYH1 ENSG00000227407 TMC4 LILRA4 lnc-LILRA4-2 LAIR1
GH19J054311 Promoter/Enhancer 0.7 Ensembl ENCODE 12.1 +122.3 122344 1.5 SPI1 EED LILRA5 HSALNG0127507 TTYH1 ENSG00000227407 LILRB2 LILRB5 ENSG00000249189 LILRA6 LILRB3 ENSG00000275210
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227407 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000227407 Gene

Latest Assembly
chr19:54,430,653-54,434,699
(GRCh38/hg38)
Size:
4,047 bases
Orientation:
Minus strand

Previous Assembly
chr19:54,941,832-54,945,878
(GRCh37/hg19 by Ensembl)
Size:
4,047 bases
Orientation:
Minus strand

Genomic View for ENSG00000227407 Gene

Genes around ENSG00000227407 on UCSC Golden Path with GeneCards custom track
ENSG00000227407 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000227407 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227407 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227407 Gene

Proteins for ENSG00000227407 Gene

Post-translational modifications for ENSG00000227407 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227407 Gene

Domains & Families for ENSG00000227407 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227407 Gene

Function for ENSG00000227407 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227407 Gene

Localization for ENSG00000227407 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227407 Gene

Pathways & Interactions for ENSG00000227407 Gene

PathCards logo

SuperPathways for ENSG00000227407 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227407 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000227407 Gene

Drugs & Compounds for ENSG00000227407 Gene

No Compound Related Data Available

Transcripts for ENSG00000227407 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000227407 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005DB0EF_9606 lncRNA 529 3

Ensembl: ENST00000457113 (view in UCSC) ,

LNCipedia: lnc-LENG9-7:1,

NONCODE: NONHSAT067913.2,

URS00009BB084_9606 lncRNA 529 2

LncBook: HSALNT0262218,

NONCODE: NONHSAT180570.1,

URS0001BF56DE_9606 lncRNA 529 1

LncBook: HSALNT0262218,

ENSG00000227407 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227407 Gene

No ASD Table

Relevant External Links for ENSG00000227407 Gene

GeneLoc Exon Structure for
ENSG00000227407

No data available for mRNA/cDNA for ENSG00000227407 Gene

Expression for ENSG00000227407 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000227407 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227407 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x5.9), Brain - Amygdala (x5.5), Brain - Caudate (basal ganglia) (x5.4), Brain - Nucleus accumbens (basal ganglia) (x5.4), and Brain - Cortex (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000227407: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227407 Gene

Orthologs for ENSG00000227407 Gene

Evolution for ENSG00000227407 Gene

ENSEMBL:
Gene Tree for ENSG00000227407 (if available)
TreeFam:
Gene Tree for ENSG00000227407 (if available)

No data available for Orthologs for ENSG00000227407 Gene

Paralogs for ENSG00000227407 Gene

No data available for Paralogs for ENSG00000227407 Gene

Variants for ENSG00000227407 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227407 Gene

Disorders for ENSG00000227407 Gene

Additional Disease Information for ENSG00000227407

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000227407 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000227407 Gene

Publications for ENSG00000227407 Gene

No publications were found for ENSG00000227407 Gene.

No data available for Mastermind for ENSG00000227407 Gene

Products for ENSG00000227407 Gene

Sources for ENSG00000227407 Gene