Aliases for ENSG00000227308 Gene

Subcategory (RNA class) for ENSG00000227308 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000227308 Gene

  • Novel Transcript 5
  • NONHSAG030605 94
  • HSALNG0022417 169
  • NONHSAG030609 94
  • Lnc-SLC4A3-2 170
  • AC009502.1 5

External Ids for ENSG00000227308 Gene

Previous GeneCards Identifiers for ENSG00000227308 Gene

  • GC02P220551

Summaries for ENSG00000227308 Gene

GeneCards Summary for ENSG00000227308 Gene

ENSG00000227308 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227308 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227308 Gene

Genomics for ENSG00000227308 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227308 Gene

Promoters and enhancers for ENSG00000227308 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J219683 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 +2.3 2294 7.4 CTCF ATF1 CREB1 ZNF362 NFYC DACH1 RAD21 SP1 GTF2F1 POLR2A OBSL1 CHPF TMEM198 SLC4A3 ENSG00000228973 DNPEP DNAJB2 ATG9A ENSG00000227308 ENSG00000231802
GH02J219706 Enhancer 0.9 Ensembl dbSUPER 0.3 +22.2 22219 1.6 CTBP1 ZNF362 MNT NFIB SP7 GLIS2 PKNOX1 TCF7L2 PRDM10 ZEB2 RPL23P4 lnc-SLC4A3-12 ENSG00000227308 LINC02832
GH02J219722 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +37.2 37220 0.8 TCF7L2 NR2F6 ZNF217 MNT NFIB NCOA3 MYC CREB1 TARDBP CTBP1 STK11IP LINC02832 lnc-SLC4A3-12 RPL23P4 ENSG00000227308
GH02J219698 Enhancer 0.7 Ensembl dbSUPER 0.4 +13.4 13420 2 ZNF384 RNF2 CEBPA POLR2A SOX13 EZH2 USF1 FOXA2 RPL23P4 lnc-SLC4A3-12 DNPEP ENSG00000227308 LINC02832
GH02J219724 Enhancer 0.9 Ensembl dbSUPER 0.3 +39.3 39320 1.4 L3MBTL2 MAX TEAD4 CBFA2T2 SMARCA4 CREB1 CEBPA GATAD2A HDAC1 ZNF316 LINC02832 RPL23P4 lnc-SLC4A3-12 ENSG00000227308
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227308 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227308 Gene

Genomic Locations for ENSG00000227308 Gene
chr2:219,685,381-219,737,937
(GRCh38/hg38)
Size:
52,557 bases
Orientation:
Plus strand
chr2:220,550,103-220,602,659
(GRCh37/hg19)
Size:
52,557 bases
Orientation:
Plus strand

Genomic View for ENSG00000227308 Gene

Genes around ENSG00000227308 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227308 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227308 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227308 Gene

Proteins for ENSG00000227308 Gene

Post-translational modifications for ENSG00000227308 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227308 Gene

Domains & Families for ENSG00000227308 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227308 Gene

Function for ENSG00000227308 Gene

Phenotypes From GWAS Catalog for ENSG00000227308 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227308 Gene

Localization for ENSG00000227308 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227308 Gene

Pathways & Interactions for ENSG00000227308 Gene

PathCards logo

SuperPathways for ENSG00000227308 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227308 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227308 Gene

Drugs & Compounds for ENSG00000227308 Gene

No Compound Related Data Available

Transcripts for ENSG00000227308 Gene

mRNA/cDNA for ENSG00000227308 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(16) RNACentral transcripts :
(14) LNCipedia transcripts :
(12) LncBook transcripts :
(9) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227308 Gene

No ASD Table

Relevant External Links for ENSG00000227308 Gene

GeneLoc Exon Structure for
ENSG00000227308

Expression for ENSG00000227308 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227308 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227308 Gene

This gene is overexpressed in Cervix - Endocervix (x10.6), Fallopian Tube (x7.8), Bladder (x4.4), and Testis (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000227308: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227308 Gene

Orthologs for ENSG00000227308 Gene

Evolution for ENSG00000227308 Gene

ENSEMBL:
Gene Tree for ENSG00000227308 (if available)
TreeFam:
Gene Tree for ENSG00000227308 (if available)

No data available for Orthologs for ENSG00000227308 Gene

Paralogs for ENSG00000227308 Gene

No data available for Paralogs for ENSG00000227308 Gene

Variants for ENSG00000227308 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227308 Gene

Disorders for ENSG00000227308 Gene

No disorders were found for ENSG00000227308 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227308 Gene

Publications for ENSG00000227308 Gene

No publications were found for ENSG00000227308 Gene.

No data available for External Links for ENSG00000227308 Gene

Products for ENSG00000227308 Gene

Sources for ENSG00000227308 Gene